RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 MARVELD3Q96A59 401 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 GMPPAQ96IJ6 420 aaPredicted RBP8.36□□□□□ -1.07
LDLR-211ENST00000560173 ARL5BQ96KC2 179 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 WFDC6Q9BQY6 131 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 MUC13Q9H3R2 512 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 DENND2DQ9H6A0 471 aaPredicted RBP8.36□□□□□ -1.07
LDLR-211ENST00000560173 EVA1AQ9H8M9 152 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 GLRX2Q9NS18 164 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 KLHL28Q9NXS3 571 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 GMPR2Q9P2T1 348 aaKnown RBP8.36□□□□□ -1.07
LDLR-211ENST00000560173 TESQ9UGI8 421 aaKnown RBP8.36□□□□□ -1.07
LDLR-211ENST00000560173 SLC7A8Q9UHI5 535 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 FOXD3Q9UJU5 478 aaPredicted RBP8.36□□□□□ -1.07
LDLR-211ENST00000560173 SLC13A4Q9UKG4 626 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 CLEC4AQ9UMR7 237 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 SPG11Q96JI7 2443 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 IGHV3-15A0A0B4J1V0 119 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 A0A1B0GWA3 101 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 M0R3H8 397 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 SULT2B1O00204 365 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 NME4O00746 187 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 MSTNO14793 375 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 DNPH1O43598 174 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 TPST2O60704 377 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 PMS2P2O95744 297 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 LGI1O95970 557 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 PLGP00747 810 aaPredicted RBP8.35□□□□□ -1.07
LDLR-211ENST00000560173 CGAP01215 116 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 FESP07332 822 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 C8BP07358 591 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 CD8BP10966 210 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 CXCR1P25024 350 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 AGTR1P30556 359 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 UQCRC1P31930 480 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 KCNJ5P48544 419 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 CTBP2P56545 445 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 PSME3P61289 254 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 CSNK2A1P68400 391 aaPredicted RBP8.35□□□□□ -1.07
LDLR-211ENST00000560173 LIPEQ05469 1076 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 TRAP1Q12931 704 aaKnown RBP8.35□□□□□ -1.07
LDLR-211ENST00000560173 KPNB1Q14974 876 aaKnown RBP8.35□□□□□ -1.07
LDLR-211ENST00000560173 RNPS1Q15287 305 aaKnown RBP8.35□□□□□ -1.07
LDLR-211ENST00000560173 NPTX1Q15818 432 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 NRF1Q16656 503 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 DUSP7Q16829 419 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 ABLIM2Q6H8Q1 611 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 MCEMP1Q8IX19 187 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 DMRTC2Q8IXT2 367 aaPredicted RBP8.35□□□□□ -1.07
LDLR-211ENST00000560173 MICU2Q8IYU8 434 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 LSMEM1Q8N8F7 131 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 OR2T12Q8NG77 320 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 OR6K3Q8NGY3 331 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 DDIT4LQ96D03 193 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 LRRC46Q96FV0 321 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 CDRT15Q96T59 188 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 ARHGDIGQ99819 225 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 ZNF559Q9BR84 538 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 PRR14Q9BWN1 585 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 POTEKPQ9BYX7 375 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 TRIM15Q9C019 465 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 TRIM2Q9C040 744 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 OPN3Q9H1Y3 402 aaPredicted RBP8.35□□□□□ -1.07
LDLR-211ENST00000560173 VCX3BQ9H321 246 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 GP6Q9HCN6 339 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 GALNT8Q9NY28 637 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 TMEM181Q9P2C4 612 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 KLHL13Q9P2N7 655 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 ING1Q9UK53 422 aaPredicted RBP8.35□□□□□ -1.07
LDLR-211ENST00000560173 EMC9Q9Y3B6 208 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 AKAP9Q99996 3911 aa8.35□□□□□ -1.07
LDLR-211ENST00000560173 ABCA4P78363 2273 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 CCDC168Q8NDH2 2452 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 A8MVM7 634 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 A8MXE2 369 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 CYTIPO60759 359 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 FMO6PO60774 539 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 NPIPB7O75200 414 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 SMNDC1O75940 238 aaKnown RBP eCLIP8.34□□□□□ -1.07
LDLR-211ENST00000560173 PRKD3O94806 890 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 IMPDH2P12268 514 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 PRF1P14222 555 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 GSK3BP49841 420 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 OR2B6P58173 313 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 SORDQ00796 357 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 BNIP2Q12982 314 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 KRTAP21-3Q3LHN1 58 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 GTF2IRD2BQ6EKJ0 949 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 ZNF474Q6S9Z5 364 aaPredicted RBP8.34□□□□□ -1.07
LDLR-211ENST00000560173 LUZP2Q86TE4 346 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 GTF2IRD2Q86UP8 949 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 RANBP3LQ86VV4 465 aaPredicted RBP8.34□□□□□ -1.07
LDLR-211ENST00000560173 ZNF295-AS1Q8N0V1 137 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 SLC43A2Q8N370 569 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 OR52E4Q8NGH9 312 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 OR4D11Q8NGI4 311 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 OR6T1Q8NGN1 323 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 DNAJA4Q8WW22 397 aaPredicted RBP8.34□□□□□ -1.07
LDLR-211ENST00000560173 ZHX1-C8orf76Q96EF9 292 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 DNAJA3Q96EY1 480 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 PSD2Q9BQI7 771 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms