RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545		A0A087WUU8	490 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	CLCA1	A8K7I4	914 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	OR10H3	O60404	316 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	WDR1	O75083	606 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	PRSS23	O95084	383 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	HIST1H2AB	P04908	130 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	IFI30	P13284	250 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	FPR1	P21462	350 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	FUT4	P22083	530 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	ENPP1	P22413	925 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	GNLY	P22749	145 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	PTGER4	P35408	488 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	IFNGR2	P38484	337 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	ARHGDIA	P52565	204 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	UGT2B15	P54855	530 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	NUP107	P57740	925 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	RAC3	P60763	192 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	SLC35A1	P78382	337 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	EGR4	Q05215	589 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	EXOC3L2	Q2M3D2	409 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	TBPL2	Q6SJ96	375 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	LINC00114	Q6XXX2	140 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	MBOAT2	Q6ZWT7	520 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	HIST3H2A	Q7L7L0	130 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	AMIGO2	Q86SJ2	522 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	ZNF605	Q86T29	641 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	GGN	Q86UU5	652 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	DOLPP1	Q86YN1	238 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	CHERP	Q8IWX8	916 aa	Known RBP	9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	NRM	Q8IXM6	262 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	RNF113B	Q8IZP6	322 aa	Known RBP	9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	GALNT11	Q8NCW6	608 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	PFN4	Q8NHR9	129 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	PRR7	Q8TB68	274 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	PIGX	Q8TBF5	258 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	SLC7A13	Q8TCU3	470 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	ZPLD1	Q8TCW7	415 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	LRTOMT	Q8WZ04	291 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	HIST1H2AC	Q93077	130 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	TAAR8	Q969N4	342 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	SGTB	Q96EQ0	304 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	DUS3L	Q96G46	650 aa	Known RBP	9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	NAA11	Q9BSU3	229 aa	Predicted RBP	9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	BDH2	Q9BUT1	245 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	ASPN	Q9BXN1	380 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	SLC19A3	Q9BZV2	496 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	TP63	Q9H3D4	680 aa	Predicted RBP	9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	MAN2C1	Q9NTJ4	1040 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	TINAG	Q9UJW2	476 aa		9.12	□□□□□ -0.95
CPSF7-221	ENST00000543545	BOD1L1	Q8NFC6	3051 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	IGHV3-15	A0A0B4J1V0	119 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	LIPT2	A6NK58	231 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	SLC22A20	A6NK97	555 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	ENO4	A6NNW6	628 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	PIP5K1C	O60331	668 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	EIF1B	O60739	113 aa	Known RBP	9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	NPIPB7	O75200	414 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	CCNB2	O95067	398 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	PMS2P2	O95744	297 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	HOXD4	P09016	255 aa	Predicted RBP	9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	IMPDH2	P12268	514 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	FUT1	P19526	365 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	ACVR2A	P27037	513 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	GRPR	P30550	384 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	DNAJA1	P31689	397 aa	Known RBP	9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	IST1	P53990	364 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	ELF3	P78545	371 aa	Predicted RBP	9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	LSM11	P83369	360 aa	Known RBP eCLIP	9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	IL1RL1	Q01638	556 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	PMS2P3	Q13401	168 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	MFSD13A	Q14CX5	517 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	LAPTM4A	Q15012	233 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	PON3	Q15166	354 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	SEC23B	Q15437	767 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	ATP6AP1	Q15904	470 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	EIF2S3L	Q2VIR3	472 aa	Known RBP	9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	CTU2	Q2VPK5	515 aa	Known RBP	9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	EMC4	Q5J8M3	183 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	FAM69A	Q5T7M9	428 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	C1orf185	Q5T7R7	199 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	PLXDC2	Q6UX71	529 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	RPTN	Q6XPR3	784 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	MAMDC2	Q7Z304	686 aa	Predicted RBP	9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	MEX3D	Q86XN8	651 aa	Known RBP	9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	MCEMP1	Q8IX19	187 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	OR4K5	Q8NGD3	323 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	MFSD8	Q8NHS3	518 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	ROBO4	Q8WZ75	1007 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	CPNE4	Q96A23	557 aa	Predicted RBP	9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	ADGRG7	Q96K78	797 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	DHRS1	Q96LJ7	313 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	SRXN1	Q9BYN0	137 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	SEMA6A	Q9H2E6	1030 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	COQ10B	Q9H8M1	238 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	NANS	Q9NR45	359 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	TRAPPC4	Q9Y296	219 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	ZNF835	Q9Y2P0	537 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	LYVE1	Q9Y5Y7	322 aa		9.11	□□□□□ -0.95
CPSF7-221	ENST00000543545	COL6A6	A6NMZ7	2263 aa		9.1	□□□□□ -0.95
CPSF7-221	ENST00000543545	SH3PXD2B	A1X283	911 aa		9.1	□□□□□ -0.95

Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms