RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 P2RY6Q15077 328 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 TRMT5Q32P41 509 aaKnown RBP12.57□□□□□ -0.4
USP28-209ENST00000540925 SFRP5Q5T4F7 317 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 PAQR6Q6TCH4 344 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 GALNT5Q7Z7M9 940 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 CALHM3Q86XJ0 350 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 KRT73Q86Y46 540 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 CADM2Q8N3J6 435 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 C11orf65Q8NCR3 313 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 C10orf82Q8WW14 230 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 ZNF775Q96BV0 537 aaPredicted RBP12.57□□□□□ -0.4
USP28-209ENST00000540925 ZHX1-C8orf76Q96EF9 292 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 DNAJA3Q96EY1 480 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 WFDC6Q9BQY6 131 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 HDHD5Q9BXW7 423 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 ACTR6Q9GZN1 396 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 C12orf10Q9HB07 376 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 FANCFQ9NPI8 374 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 PRSS50Q9UI38 385 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 RAI1Q7Z5J4 1906 aaPredicted RBP12.56□□□□□ -0.4
USP28-209ENST00000540925 PRRC2AP48634 2157 aaKnown RBP12.56□□□□□ -0.4
USP28-209ENST00000540925 A8MVM7 634 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 TPST2O60704 377 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 FPR1P21462 350 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 ADSLP30566 484 aaPredicted RBP12.56□□□□□ -0.4
USP28-209ENST00000540925 CRYBA2P53672 197 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 OR2B6P58173 313 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 COPZ1P61923 177 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 BNIP2Q12982 314 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 NFYCQ13952 458 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 CAPRIN1Q14444 709 aaKnown RBP12.56□□□□□ -0.4
USP28-209ENST00000540925 POU4F3Q15319 338 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 NANOGP8Q6NSW7 305 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 BHLHE22Q8NFJ8 381 aaPredicted RBP12.56□□□□□ -0.4
USP28-209ENST00000540925 STEAP2Q8NFT2 490 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 STK35Q8TDR2 534 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 S100PBPQ96BU1 408 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 HS3ST6Q96QI5 342 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 ZNF607Q96SK3 696 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 FOXC2Q99958 501 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 PTDSS2Q9BVG9 487 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 SPATA5L1Q9BVQ7 753 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 NANOGQ9H9S0 305 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 CACYBPQ9HB71 228 aaKnown RBP12.56□□□□□ -0.4
USP28-209ENST00000540925 CCM2LQ9NUG4 571 aaPredicted RBP12.56□□□□□ -0.4
USP28-209ENST00000540925 EMC3Q9P0I2 261 aa12.56□□□□□ -0.4
USP28-209ENST00000540925 A0A1B0GWA3 101 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 PRORSD1PA6NEY8 169 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 AQP7P3A6NL99 342 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 BBIP1A8MTZ0 92 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 PDLIM1O00151 329 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 GPR171O14626 319 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 SLC22A2O15244 555 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 ADAP00813 363 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 NPPAP01160 153 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 GPIP06744 558 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 AQP1P29972 269 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 IDUAP35475 653 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 ITGADQ13349 1161 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 CEACAM7Q14002 265 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 C1orf140Q5VVS0 124 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 ZIC4Q8N9L1 334 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 GPR32P1Q8NGA4 272 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 OR8J3Q8NGG0 315 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 LRRC58Q96CX6 371 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 TMEM204Q9BSN7 226 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 PIF1Q9H611 641 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 EVA1AQ9H8M9 152 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 MALT1Q9UDY8 824 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 TESQ9UGI8 421 aaKnown RBP12.55□□□□□ -0.4
USP28-209ENST00000540925 ITGB1BP2Q9UKP3 347 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 ANGPT4Q9Y264 503 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 PLEKHA6Q9Y2H5 1048 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 FLVCR1Q9Y5Y0 555 aa12.55□□□□□ -0.4
USP28-209ENST00000540925 IGKV1D-42A0A075B6H8 117 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 SERPINB7O75635 380 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 LGI1O95970 557 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 RAF1P04049 648 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 C8BP07358 591 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 CD53P19397 219 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 CD247P20963 164 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 IGHV1-2P23083 117 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 PCGF2P35227 344 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 SF3A3Q12874 501 aaKnown RBP eCLIP12.54□□□□□ -0.4
USP28-209ENST00000540925 OR7A5Q15622 319 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 TSC22D1Q15714 1073 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 NRF1Q16656 503 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 DUSP7Q16829 419 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 CYP51A1Q16850 503 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 BEX5Q5H9J7 111 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 FAM91A1Q658Y4 838 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 REP15Q6BDI9 236 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 CCDC80Q76M96 950 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.54□□□□□ -0.4
USP28-209ENST00000540925 ARMC8Q8IUR7 673 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 SLC30A8Q8IWU4 369 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 TMEM99Q8N816 258 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 OR10A6Q8NH74 314 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 IGFBPL1Q8WX77 278 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 TMEM45BQ96B21 275 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms