RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 NXPE2Q96DL1 559 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 SGF29Q96ES7 293 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CNRIP1Q96F85 164 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 MRPL48Q96GC5 212 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF641Q96N77 438 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 FOPNLQ96NB1 174 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF317Q96PQ6 595 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 PLEKHF1Q96S99 279 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ZBTB18Q99592 522 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ATF6BQ99941 703 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 OVOL2Q9BRP0 275 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 TMEM246Q9BRR3 403 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 TBCDQ9BTW9 1192 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 KIFC1Q9BW19 673 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 MRPS26Q9BYN8 205 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 C6orf62Q9GZU0 229 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 OPN3Q9H1Y3 402 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 EGLN3Q9H6Z9 239 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 HEXA-AS1Q9H8Q6 139 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RPF1Q9H9Y2 349 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 DNAJC4Q9NNZ3 241 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 IL1RAPL2Q9NP60 686 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 TREM1Q9NP99 234 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 UFSP2Q9NUQ7 469 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CMTM6Q9NX76 183 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 GDAP2Q9NXN4 497 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 GTSE1Q9NYZ3 720 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CD274Q9NZQ7 290 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 COX16Q9P0S2 106 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 STX18Q9P2W9 335 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 WARS2Q9UGM6 360 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CD300AQ9UGN4 299 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RSL24D1Q9UHA3 163 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 PSME2Q9UL46 239 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 COPS3Q9UNS2 423 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RPL26L1Q9UNX3 145 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RNF24Q9Y225 148 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 EIF3LQ9Y262 564 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ARL2BPQ9Y2Y0 163 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 NAALAD2Q9Y3Q0 740 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 SAMHD1Q9Y3Z3 626 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 HYOU1Q9Y4L1 999 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 SAR1BQ9Y6B6 198 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ZFP37Q9Y6Q3 630 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ATRQ13535 2644 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ACACAQ13085 2346 aa1.78□□□□□ -2.13
HMGB1-208ENST00000490788 MYO7AQ13402 2215 aa1.78□□□□□ -2.13
HMGB1-208ENST00000490788 PTPRFP10586 1907 aa1.78□□□□□ -2.13
HMGB1-208ENST00000490788 GREB1Q4ZG55 1949 aa1.78□□□□□ -2.13
HMGB1-208ENST00000490788 MIA3Q5JRA6 1907 aa1.78□□□□□ -2.13
HMGB1-208ENST00000490788 DOCK1Q14185 1865 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 NLRC5Q86WI3 1866 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 PATJQ8NI35 1801 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 IGHV4-30-2A0A087WSY4 118 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 hCG_38984A0A1B0GV85 526 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SERTM2A0A1B0GWG4 89 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 A0A1W2PPK0 400 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 FAM92AA1XBS5 289 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TRIM49BA6NDI0 452 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ARHGAP42A6NI28 874 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 EFCAB7A8K855 629 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 MEI4A8MW99 385 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 LEUTXA8MZ59 168 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 C17orf105B2RV13 164 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 FAM25AB3EWG3 89 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 FAM25CB3EWG5 89 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 FAM25GB3EWG6 89 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TCP11X1B4DZS4 312 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TMEM150CB9EJG8 249 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 HSBP1L1C9JCN9 74 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 F8VVB4 439 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 F8VWA3 439 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 H0YIV9 168 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 I3L4J1 428 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 K7EQD1 137 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 K7ERQ8 282 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 RNF103O00237 685 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 WRBO00258 174 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 FOXE1O00358 373 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TRAFD1O14545 582 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TCAPO15273 167 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 OGTO15294 1046 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 B4GAT1O43505 415 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SGCEO43556 437 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 BUB1O43683 1085 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 VEGFDO43915 354 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 EIF1BO60739 113 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 DNAJB6O75190 326 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TOM1L1O75674 476 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 POP7O75817 140 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 MFN2O95140 757 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SNAI1O95863 264 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 AGTP01019 485 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 IL1BP01584 269 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 C9P02748 559 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CXCL10P02778 98 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 OPN1MWP04001 364 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 KLK3P07288 261 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SERPINF2P08697 491 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 STSP08842 583 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms