RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 KLHL28Q9NXS3 571 aa13.85□□□□□ -0.19
HMGA1-206ENST00000478214 RPS6KB2Q9UBS0 482 aa13.85□□□□□ -0.19
HMGA1-206ENST00000478214 NDRG3Q9UGV2 375 aa13.85□□□□□ -0.19
HMGA1-206ENST00000478214 TESMINQ9Y4I5 508 aa13.85□□□□□ -0.19
HMGA1-206ENST00000478214 AKAP9Q99996 3911 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 IGKV3D-15A0A087WSY6 115 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 LIPT2A6NK58 231 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 ZNF724A8MTY0 619 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 AIM2O14862 343 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 SNX3O60493 162 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 TPST2O60704 377 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 EIF1BO60739 113 aaKnown RBP13.84□□□□□ -0.19
HMGA1-206ENST00000478214 NPIPB7O75200 414 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 LGI1O95970 557 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 IDUAP35475 653 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 CEACAM7Q14002 265 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 PDK3Q15120 406 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 OR7A5Q15622 319 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 INTS11Q5TA45 600 aaKnown RBP13.84□□□□□ -0.19
HMGA1-206ENST00000478214 C22orf34Q6ZV56 151 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.84□□□□□ -0.19
HMGA1-206ENST00000478214 LSMEM1Q8N8F7 131 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 PIGXQ8TBF5 258 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 TAMM41Q96BW9 452 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 ZNF583Q96ND8 569 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 POLDIP3Q9BY77 421 aaKnown RBP13.84□□□□□ -0.19
HMGA1-206ENST00000478214 MYLK2Q9H1R3 596 aa13.84□□□□□ -0.19
HMGA1-206ENST00000478214 ELOA3DA6NLF2 546 aaPredicted RBP13.83□□□□□ -0.2
HMGA1-206ENST00000478214 CCT8L1PA6NM43 557 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 M0R3H8 397 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 CASKO14936 926 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 GPIP06744 558 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 CD247P20963 164 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 OR3A2P47893 321 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 CRYBA2P53672 197 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 NCALDP61601 193 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 NRF1Q16656 503 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 ELOA3BQ3SY89 546 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 C1orf140Q5VVS0 124 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 C6orf89Q6UWU4 347 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 CCDC80Q76M96 950 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 GALNT5Q7Z7M9 940 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 GABRG1Q8N1C3 465 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 ELOA3Q8NG57 546 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 STK35Q8TDR2 534 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 NRGNQ92686 78 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 ZC3HAV1LQ96H79 300 aaKnown RBP13.83□□□□□ -0.2
HMGA1-206ENST00000478214 ARHGDIGQ99819 225 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 NAA11Q9BSU3 229 aaPredicted RBP13.83□□□□□ -0.2
HMGA1-206ENST00000478214 MED18Q9BUE0 208 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 CLEC4MQ9H2X3 399 aaPredicted RBP13.83□□□□□ -0.2
HMGA1-206ENST00000478214 CMTM6Q9NX76 183 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 EMC3Q9P0I2 261 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 TESQ9UGI8 421 aaKnown RBP13.83□□□□□ -0.2
HMGA1-206ENST00000478214 PRSS50Q9UI38 385 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 ABCA4P78363 2273 aa13.83□□□□□ -0.2
HMGA1-206ENST00000478214 CCDC168Q8NDH2 2452 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 MYO9AB2RTY4 2548 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 AKR7A3O95154 331 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 C8BP07358 591 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 NTF4P34130 210 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 SLC16A1P53985 500 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 EGR4Q05215 589 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 POU4F3Q15319 338 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 OR1Q1Q15612 314 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 NPTX1Q15818 432 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 ALG10BQ5I7T1 473 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 OTUD3Q5T2D3 398 aaPredicted RBP13.82□□□□□ -0.2
HMGA1-206ENST00000478214 PAQR6Q6TCH4 344 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 CXorf67Q86X51 503 aaPredicted RBP13.82□□□□□ -0.2
HMGA1-206ENST00000478214 RBM45Q8IUH3 476 aaKnown RBP13.82□□□□□ -0.2
HMGA1-206ENST00000478214 TMEM99Q8N816 258 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 OR4D11Q8NGI4 311 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 OR6T1Q8NGN1 323 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 SLC26A7Q8TE54 656 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 DNAJA4Q8WW22 397 aaPredicted RBP13.82□□□□□ -0.2
HMGA1-206ENST00000478214 PTDSS2Q9BVG9 487 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 TAPBPLQ9BX59 468 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 EVA1AQ9H8M9 152 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 C12orf10Q9HB07 376 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 TMEM27Q9HBJ8 222 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 FANCFQ9NPI8 374 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 ADPRHL2Q9NX46 363 aa13.82□□□□□ -0.2
HMGA1-206ENST00000478214 GMPR2Q9P2T1 348 aaKnown RBP13.82□□□□□ -0.2
HMGA1-206ENST00000478214 AKAP6Q13023 2319 aa13.81□□□□□ -0.2
HMGA1-206ENST00000478214 A0A0B4J2E0 115 aa13.81□□□□□ -0.2
HMGA1-206ENST00000478214 A0A1B0GX12 115 aa13.81□□□□□ -0.2
HMGA1-206ENST00000478214 FAM220BPB1ANY3 271 aa13.81□□□□□ -0.2
HMGA1-206ENST00000478214 GPR171O14626 319 aa13.81□□□□□ -0.2
HMGA1-206ENST00000478214 AHSA1O95433 338 aa13.81□□□□□ -0.2
HMGA1-206ENST00000478214 ADAP00813 363 aa13.81□□□□□ -0.2
HMGA1-206ENST00000478214 HRGP04196 525 aa13.81□□□□□ -0.2
HMGA1-206ENST00000478214 PNMTP11086 282 aa13.81□□□□□ -0.2
HMGA1-206ENST00000478214 PSMB1P20618 241 aaKnown RBP13.81□□□□□ -0.2
HMGA1-206ENST00000478214 VEZF1Q14119 521 aa13.81□□□□□ -0.2
HMGA1-206ENST00000478214 SLC17A1Q14916 467 aa13.81□□□□□ -0.2
HMGA1-206ENST00000478214 TSC22D1Q15714 1073 aa13.81□□□□□ -0.2
HMGA1-206ENST00000478214 FBXW10Q5XX13 1052 aa13.81□□□□□ -0.2
HMGA1-206ENST00000478214 ERICH5Q6P6B1 374 aa13.81□□□□□ -0.2
HMGA1-206ENST00000478214 ULK3Q6PHR2 472 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms