RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CPSF6Q16630 551 aaKnown RBP eCLIP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 MEP1AQ16819 746 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 ATP6V1FQ16864 119 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 RNF151Q2KHN1 245 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 QRICH1Q2TAL8 776 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC25A53Q5H9E4 307 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 LRRC73Q5JTD7 316 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 CBWD5Q5RIA9 395 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC22A16Q86VW1 577 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC26A11Q86WA9 606 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 IGDCC3Q8IVU1 814 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 PGAM4Q8N0Y7 254 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 LRRC75A-AS1Q8N1F1 130 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 GTPBP8Q8N3Z3 284 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TXNDC5Q8NBS9 432 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEM116Q8NCL8 245 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 KCNG3Q8TAE7 436 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 DCAKDQ8WVC6 231 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 C11orf40Q8WZ69 217 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TM9SF4Q92544 642 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 OSTF1Q92882 214 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEM203Q969S6 136 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 PPWD1Q96BP3 646 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 ZBED6CLQ96FA7 236 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 SMIM10Q96HG1 83 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 SENP8Q96LD8 212 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF382Q96SR6 550 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 GPHA2Q96T91 129 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 NPAS2Q99743 824 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEM43Q9BTV4 400 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 KATNB1Q9BVA0 655 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 HDHD5Q9BXW7 423 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 KRTAP4-6Q9BYQ5 205 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TMPRSS5Q9H3S3 457 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 C1orf198Q9H425 327 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 FAM83DQ9H4H8 585 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 REEP4Q9H6H4 257 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 AKIRIN1Q9H9L7 192 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 BARX1Q9HBU1 254 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 MCUBQ9NWR8 336 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 LYARQ9NX58 379 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 USE1Q9NZ43 259 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 CD84Q9UIB8 345 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF639Q9UID6 485 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 OR51B4Q9Y5P0 310 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 KLF18A0A0U1RQI7 1052 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 FAM237BA0A1B0GVD1 139 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 NPIPB13A6NJU9 1138 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 ANXA2P2A6NMY6 339 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 DISC1C4P0D8 188 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 NPIPB4C9JG80 1138 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 TSTD3H0UI37 97 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 M0QZQ0 153 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 EEF2KO00418 725 aaKnown RBP4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 EMC8O43402 210 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 TCF21O43680 179 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 KIAA0513O60268 411 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 FCMRO60667 390 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 NR3C1P04150 777 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 FCER1AP12319 257 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 IL7P13232 177 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 IFNGR2P38484 337 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 GDNFP39905 211 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 GRIA1P42261 906 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 GRIA3P42263 894 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 MATKP42679 507 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 IDH2P48735 452 aaKnown RBP4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 CYB561P49447 251 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 NR0B1P51843 470 aaKnown RBP4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 CD81P60033 236 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 RAB2AP61019 212 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 MAGOHP61326 146 aaKnown RBP4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 IFITM3Q01628 133 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC10A7Q0GE19 358 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 PLA2G7Q13093 441 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 SEMA3BQ13214 749 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 CSRP2Q16527 193 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 CARTPTQ16568 116 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC22A6Q4U2R8 563 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 FGD3Q5JSP0 725 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF569Q5MCW4 686 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 ANKRD22Q5VYY1 191 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 CALHM1Q8IU99 346 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 CFAP52Q8N1V2 620 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 CPXM2Q8N436 756 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 EIF4E3Q8N5X7 224 aaKnown RBP4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF283Q8N7M2 679 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF557Q8N988 423 aaPredicted RBP4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 GATSQ8NAP1 163 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 PCNPQ8WW12 178 aaKnown RBP4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEM234Q8WY98 164 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 PPP1R16AQ96I34 528 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 THOC3Q96J01 351 aaKnown RBP4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 DCLRE1CQ96SD1 692 aaKnown RBP4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 TSNAXQ99598 290 aaKnown RBP4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 EGFL8Q99944 293 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 TTYH2Q9BSA4 534 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 DCUN1D5Q9BTE7 237 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 ALG12Q9BV10 488 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 ALG8Q9BVK2 526 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms