RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CYLC2Q14093 348 aaPredicted RBP14.07□□□□□ -0.16
CLN3-201ENST00000333496 MAPRE2Q15555 327 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 EXOC3L2Q2M3D2 409 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 RABL3Q5HYI8 236 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 ABLIM2Q6H8Q1 611 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 TFAP2EQ6VUC0 442 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 TMEM200AQ86VY9 491 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 ZNF775Q96BV0 537 aaPredicted RBP14.07□□□□□ -0.16
CLN3-201ENST00000333496 DDIT4LQ96D03 193 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 DACH2Q96NX9 599 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 WFIKKN1Q96NZ8 548 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 ZNF607Q96SK3 696 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 PRR14Q9BWN1 585 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 PIF1Q9H611 641 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 KLHL9Q9P2J3 617 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 TRAPPC4Q9Y296 219 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 ZNF716A6NP11 495 aa14.06□□□□□ -0.16
CLN3-201ENST00000333496 SLC22A2O15244 555 aa14.06□□□□□ -0.16
CLN3-201ENST00000333496 NPPAP01160 153 aa14.06□□□□□ -0.16
CLN3-201ENST00000333496 CXCR1P25024 350 aa14.06□□□□□ -0.16
CLN3-201ENST00000333496 EDNRAP25101 427 aa14.06□□□□□ -0.16
CLN3-201ENST00000333496 HTR2AP28223 471 aa14.06□□□□□ -0.16
CLN3-201ENST00000333496 STAC2Q6ZMT1 411 aa14.06□□□□□ -0.16
CLN3-201ENST00000333496 ATG4DQ86TL0 474 aaPredicted RBP14.06□□□□□ -0.16
CLN3-201ENST00000333496 CALHM3Q86XJ0 350 aa14.06□□□□□ -0.16
CLN3-201ENST00000333496 CCDC103Q8IW40 242 aa14.06□□□□□ -0.16
CLN3-201ENST00000333496 POU5F2Q8N7G0 328 aa14.06□□□□□ -0.16
CLN3-201ENST00000333496 RASSF1Q9NS23 344 aa14.06□□□□□ -0.16
CLN3-201ENST00000333496 TESMINQ9Y4I5 508 aa14.06□□□□□ -0.16
CLN3-201ENST00000333496 AKAP6Q13023 2319 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 TMEM229AB2RXF0 380 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 C16orf97H3BN30 126 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 M0QX08 132 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 DNPH1O43598 174 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 TPST2O60704 377 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 SERPINB7O75635 380 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 OPN1SWP03999 348 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 FPR1P21462 350 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 OR2B6P58173 313 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 DUSP7Q16829 419 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 BEND4Q6ZU67 534 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 ARMC8Q8IUR7 673 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 LSMEM1Q8N8F7 131 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 SMYD1Q8NB12 490 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 GPR32P1Q8NGA4 272 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 OR8J3Q8NGG0 315 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 NRGNQ92686 78 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 POTEKPQ9BYX7 375 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 MMADHCQ9H3L0 296 aaPredicted RBP14.05□□□□□ -0.16
CLN3-201ENST00000333496 RNPEPL1Q9HAU8 725 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 KLHL28Q9NXS3 571 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 NDRG3Q9UGV2 375 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 TAGLN3Q9UI15 199 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 USP22Q9UPT9 525 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 ANKRD17O75179 2603 aaKnown RBP14.05□□□□□ -0.16
CLN3-201ENST00000333496 CREBBPQ92793 2442 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 SPG11Q96JI7 2443 aa14.05□□□□□ -0.16
CLN3-201ENST00000333496 IGKV3D-15A0A087WSY6 115 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 ZNF724A8MTY0 619 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 NPIPB7O75200 414 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 NTF4P34130 210 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 PCGF2P35227 344 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 CRYBA2P53672 197 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 EGR4Q05215 589 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 VMACQ2NL98 169 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 ANKRD34AQ69YU3 496 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 ARHGAP24Q8N264 748 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 PCYOX1LQ8NBM8 494 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 BHLHE22Q8NFJ8 381 aaPredicted RBP14.04□□□□□ -0.16
CLN3-201ENST00000333496 RP9Q8TA86 221 aaKnown RBP14.04□□□□□ -0.16
CLN3-201ENST00000333496 RCN3Q96D15 328 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 MYCBPQ99417 103 aaPredicted RBP14.04□□□□□ -0.16
CLN3-201ENST00000333496 POLDIP3Q9BY77 421 aaKnown RBP14.04□□□□□ -0.16
CLN3-201ENST00000333496 KLHL4Q9C0H6 718 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 PRORSD1PA6NEY8 169 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 LIPT2A6NK58 231 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 A8MVM7 634 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 SIAH2O43255 324 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 LGI1O95970 557 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 PRDX6P30041 224 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 SLC35A1P78382 337 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 CEACAM7Q14002 265 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 PDK3Q15120 406 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.04□□□□□ -0.16
CLN3-201ENST00000333496 STK32CQ86UX6 486 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 GABRG1Q8N1C3 465 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 TAMM41Q96BW9 452 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 ZHX1-C8orf76Q96EF9 292 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 ZNF583Q96ND8 569 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 SH3GL1Q99961 368 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 ECSITQ9BQ95 431 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 BTBD10Q9BSF8 475 aa14.04□□□□□ -0.16
CLN3-201ENST00000333496 CLEC4MQ9H2X3 399 aaPredicted RBP14.04□□□□□ -0.16
CLN3-201ENST00000333496 OTOGQ6ZRI0 2925 aa14.03□□□□□ -0.16
CLN3-201ENST00000333496 A0A1B0GWA3 101 aa14.03□□□□□ -0.16
CLN3-201ENST00000333496 COX4I1P13073 169 aa14.03□□□□□ -0.16
CLN3-201ENST00000333496 IDUAP35475 653 aa14.03□□□□□ -0.16
CLN3-201ENST00000333496 OR3A2P47893 321 aa14.03□□□□□ -0.16
CLN3-201ENST00000333496 SLC16A1P53985 500 aa14.03□□□□□ -0.16
CLN3-201ENST00000333496 RGS8P57771 180 aaPredicted RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms