RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 HSPB2A8KAH6 182 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 M0R3H8 397 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 SYT5O00445 386 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 CXCL13O43927 109 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 TOXO94900 526 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 C8BP07358 591 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 KLK2P20151 261 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 FKBP2P26885 142 aaKnown RBP15.47■□□□□ 0.07
CLN3-217ENST00000565354 KDELR2P33947 212 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 TIMP3P35625 211 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 CARD18P57730 90 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 PON3Q15166 354 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 HSPB2Q16082 182 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 DUSP7Q16829 419 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 SAMD4BQ5PRF9 694 aaKnown RBP15.47■□□□□ 0.07
CLN3-217ENST00000565354 RNF148Q8N7C7 305 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 VANGL1Q8TAA9 524 aaPredicted RBP15.47■□□□□ 0.07
CLN3-217ENST00000565354 WNT2BQ93097 391 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 DDIT4LQ96D03 193 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 ZNF845Q96IR2 970 aaPredicted RBP15.47■□□□□ 0.07
CLN3-217ENST00000565354 UCK2Q9BZX2 261 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 TRIM2Q9C040 744 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 ADPRHL2Q9NX46 363 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 GMPR2Q9P2T1 348 aaKnown RBP15.47■□□□□ 0.07
CLN3-217ENST00000565354 OSGIN1Q9UJX0 560 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 PACSIN3Q9UKS6 424 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 RNF6Q9Y252 685 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 SLC9A8Q9Y2E8 581 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 NSD1Q96L73 2696 aaPredicted RBP15.46■□□□□ 0.07
CLN3-217ENST00000565354 MBD3L4A6NDZ8 208 aaPredicted RBP15.46■□□□□ 0.07
CLN3-217ENST00000565354 MBD3L3A6NE82 208 aaPredicted RBP15.46■□□□□ 0.07
CLN3-217ENST00000565354 MBD3L5A6NJ08 208 aaPredicted RBP15.46■□□□□ 0.07
CLN3-217ENST00000565354 KDM4EB2RXH2 506 aaPredicted RBP15.46■□□□□ 0.07
CLN3-217ENST00000565354 EFNA2O43921 213 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 LGI1O95970 557 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 FESP07332 822 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 FCGR2AP12318 317 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 TCN1P20061 433 aaPredicted RBP15.46■□□□□ 0.07
CLN3-217ENST00000565354 CD247P20963 164 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 SHC1P29353 583 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 DLX5P56178 289 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 CYBRD1Q53TN4 286 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 SYT14P1Q58G82 188 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 PLXDC2Q6UX71 529 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 CCDC71Q8IV32 467 aaPredicted RBP15.46■□□□□ 0.07
CLN3-217ENST00000565354 C9orf106Q8NAJ2 232 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 GPR32P1Q8NGA4 272 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 MBD3L2Q8NHZ7 208 aaPredicted RBP15.46■□□□□ 0.07
CLN3-217ENST00000565354 LZICQ8WZA0 190 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 OSTF1Q92882 214 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 NINJ1Q92982 152 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 TPD52L3Q96J77 140 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 ADGRG7Q96K78 797 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 CDRT15Q96T59 188 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 ARHGDIGQ99819 225 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 CLCF1Q9UBD9 225 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 ZNF175Q9Y473 711 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 MED12Q93074 2177 aa15.46■□□□□ 0.07
CLN3-217ENST00000565354 A0A0G2JNJ9 132 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 A0A1W2PNR3 127 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 TMEM72A0PK05 275 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 ELOA3DA6NLF2 546 aaPredicted RBP15.45■□□□□ 0.06
CLN3-217ENST00000565354 ADAMDEC1O15204 470 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 ZNF682O95780 498 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 TMIGD3P0DMS9 266 aaPredicted RBP15.45■□□□□ 0.06
CLN3-217ENST00000565354 CSNK2A1P68400 391 aaPredicted RBP15.45■□□□□ 0.06
CLN3-217ENST00000565354 NRF1Q16656 503 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 CTU2Q2VPK5 515 aaKnown RBP15.45■□□□□ 0.06
CLN3-217ENST00000565354 ELOA3BQ3SY89 546 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 OR2A2Q6IF42 318 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 COMTD1Q86VU5 262 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 ADGRG3Q86Y34 549 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 ELOA3Q8NG57 546 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 FNDC9Q8TBE3 224 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 CPNE4Q96A23 557 aaPredicted RBP15.45■□□□□ 0.06
CLN3-217ENST00000565354 ZHX1-C8orf76Q96EF9 292 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 ZFP3Q96NJ6 502 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 UCN2Q96RP3 112 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 MCHR1Q99705 422 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 ADAM19Q9H013 955 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 SLC24A3Q9HC58 644 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 CCM2LQ9NUG4 571 aaPredicted RBP15.45■□□□□ 0.06
CLN3-217ENST00000565354 Q9UFV3 132 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 EGFL7Q9UHF1 273 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 SH3GLB1Q9Y371 365 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 ARHGAP21Q5T5U3 1957 aa15.45■□□□□ 0.06
CLN3-217ENST00000565354 HRNRQ86YZ3 2850 aaPredicted RBP15.44■□□□□ 0.06
CLN3-217ENST00000565354 SULT2B1O00204 365 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 DVL2O14641 736 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 ZNF208O43345 1280 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 UBOX5O94941 541 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 PLGP00747 810 aaPredicted RBP15.44■□□□□ 0.06
CLN3-217ENST00000565354 NCK1P16333 377 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 CLK1P49759 484 aaKnown RBP15.44■□□□□ 0.06
CLN3-217ENST00000565354 MAP2K6P52564 334 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 ZNF136P52737 540 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 MYBPHQ13203 477 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 ALG10BQ5I7T1 473 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 GLYATQ6IB77 296 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 SEM1Q6ZVN7 128 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms