RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ARFGEF3Q5TH69 2177 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 MALRD1Q5VYJ5 2156 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.37□□□□□ -0.117e-9■■□□□ 13.5
CLN3-208ENST00000561505 A0A1W2PR80 420 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 PRAMEF27A3QJZ7 478 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 CCT8L1PA6NM43 557 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 CFLARO15519 480 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 EIF1BO60739 113 aaKnown RBP14.37□□□□□ -0.11
CLN3-208ENST00000561505 CYP7B1O75881 506 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 MAGEA8P43361 318 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 HTR3AP46098 478 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 GZMKP49863 264 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 KCNJ10P78508 379 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 CHRNEQ04844 493 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 MAD2L1Q13257 205 aaPredicted RBP14.37□□□□□ -0.11
CLN3-208ENST00000561505 SAXO2Q658L1 398 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 OR4F3Q6IEY1 312 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 GSPT2Q8IYD1 628 aaKnown RBP14.37□□□□□ -0.11
CLN3-208ENST00000561505 ZIC4Q8N9L1 334 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.37□□□□□ -0.11
CLN3-208ENST00000561505 HTRA1Q92743 480 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 PMM1Q92871 262 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 SLC35G5Q96KT7 338 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 RHOXF2Q9BQY4 288 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 OR11A1Q9GZK7 315 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 OR51I1Q9H343 314 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 MANSC1Q9H8J5 431 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 PCDHGB4Q9UN71 923 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 SLC9A8Q9Y2E8 581 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 WDR45Q9Y484 360 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 PMF1-BGLAPU3KQ54 211 aa14.37□□□□□ -0.11
CLN3-208ENST00000561505 SVEP1Q4LDE5 3571 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 RNF103-CHMP3A0A140T963 221 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 PRSS51A0A1B0GVH4 220 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 M0R1B8 84 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 OR12D1P0DN82 309 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 TFPIP10646 304 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 IMPDH2P12268 514 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 UQCRC2P22695 453 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 IGFBP5P24593 272 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 TSPO2Q5TGU0 170 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 ZCCHC23Q6ZST2 131 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 CMIPQ8IY22 773 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 CLEC4FQ8N1N0 589 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 RIBC1Q8N443 379 aaPredicted RBP14.36□□□□□ -0.11
CLN3-208ENST00000561505 UBLCP1Q8WVY7 318 aaPredicted RBP14.36□□□□□ -0.11
CLN3-208ENST00000561505 TESCQ96BS2 214 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 ROPN1LQ96C74 230 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 NEURL3Q96EH8 262 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 PRR14Q9BWN1 585 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 SHARPINQ9H0F6 387 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 LGALS13Q9UHV8 139 aa14.36□□□□□ -0.11
CLN3-208ENST00000561505 SLC35F4A4IF30 521 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 NUDT17P0C025 328 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 ZNF16P17020 682 aaPredicted RBP14.35□□□□□ -0.11
CLN3-208ENST00000561505 PAX7P23759 505 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 MPGP29372 298 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 ETV4P43268 484 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 NR4A2P43354 598 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 SLC35A1P78382 337 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 TGFBR3Q03167 851 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 CASP8Q14790 479 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 PAQR6Q6TCH4 344 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 C16orf62Q7Z3J2 963 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 ARIH2OSQ8N7S6 290 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 KIF18AQ8NI77 898 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 XAGE5Q8WWM1 108 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 CNOT9Q92600 299 aaKnown RBP14.35□□□□□ -0.11
CLN3-208ENST00000561505 TUBGCP3Q96CW5 907 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 SF3B5Q9BWJ5 86 aaKnown RBP14.35□□□□□ -0.11
CLN3-208ENST00000561505 C1QTNF6Q9BXI9 259 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 ADAM19Q9H013 955 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 OBP2BQ9NPH6 170 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.35□□□□□ -0.11
CLN3-208ENST00000561505 NOP53Q9NZM5 478 aaKnown RBP14.35□□□□□ -0.11
CLN3-208ENST00000561505 OSGIN1Q9UJX0 560 aa14.35□□□□□ -0.11
CLN3-208ENST00000561505 HEATR1Q9H583 2144 aaKnown RBP14.35□□□□□ -0.11
CLN3-208ENST00000561505 SMIM23A6NLE4 172 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 CLDN24A6NM45 220 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 BPGMP07738 259 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 RPS4Y1P22090 263 aaKnown RBP14.34□□□□□ -0.11
CLN3-208ENST00000561505 SOAT1P35610 550 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 PRPS1P60891 318 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 PGS1Q32NB8 556 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 C3orf36Q3SXR2 165 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 ATAD3BQ5T9A4 648 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 LRRC34Q8IZ02 419 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 ARFGAP2Q8N6H7 521 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 ZNF563Q8TA94 476 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 AGR3Q8TD06 166 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 TCP10LQ8TDR4 215 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 RAB8BQ92930 207 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 MSI2Q96DH6 328 aaKnown RBP14.34□□□□□ -0.11
CLN3-208ENST00000561505 C19orf24Q9BVV8 132 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 SLC38A1Q9H2H9 487 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 MYOZ1Q9NP98 299 aaPredicted RBP14.34□□□□□ -0.11
CLN3-208ENST00000561505 CRNNQ9UBG3 495 aaPredicted RBP14.34□□□□□ -0.11
CLN3-208ENST00000561505 ATP23Q9Y6H3 246 aa14.34□□□□□ -0.11
CLN3-208ENST00000561505 TMED7-TICAM2A0A0A6YYA0 188 aa14.33□□□□□ -0.12
CLN3-208ENST00000561505 TMEM72A0PK05 275 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms