RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PROX1Q92786 737 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 ARL5BQ96KC2 179 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 WFDC6Q9BQY6 131 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 TMEM27Q9HBJ8 222 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 NDE1Q9NXR1 346 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 ADA2Q9NZK5 511 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 SELENONQ9NZV5 590 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 TMEM181Q9P2C4 612 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 BAG5Q9UL15 447 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 SLC9A8Q9Y2E8 581 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 ADGRG4Q8IZF6 3080 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 A0A1B0GWA3 101 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 ELOA3DA6NLF2 546 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-228ENST00000557302 A8MVM7 634 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 EEF1E1-BLOC1S5C9J1V9 151 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 CXCR6O00574 342 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 EEF1E1O43324 174 aaKnown RBP12.15□□□□□ -0.46
SHMT2-228ENST00000557302 FMO6PO60774 539 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 TNFSF13O75888 250 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 PMS2P2O95744 297 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 COL8A1P27658 744 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 ASCL1P50553 236 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 SIRPAP78324 504 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 TFF3Q07654 80 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 RNPS1Q15287 305 aaKnown RBP12.15□□□□□ -0.46
SHMT2-228ENST00000557302 OR1Q1Q15612 314 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 ELOA3BQ3SY89 546 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 CYBRD1Q53TN4 286 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 C16orf89Q6UX73 402 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 FCRLAQ7L513 359 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 ATG4DQ86TL0 474 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-228ENST00000557302 PGAM4Q8N0Y7 254 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 ELOA3Q8NG57 546 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 VANGL1Q8TAA9 524 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-228ENST00000557302 RNF128Q8TEB7 428 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 ZHX1-C8orf76Q96EF9 292 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 LRRC46Q96FV0 321 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 GMPPAQ96IJ6 420 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-228ENST00000557302 NSL1Q96IY1 281 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 MCHR1Q99705 422 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 PRR14Q9BWN1 585 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 PIGMQ9H3S5 423 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 C12orf10Q9HB07 376 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 GLRX2Q9NS18 164 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 PACSIN3Q9UKS6 424 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 TRAPPC4Q9Y296 219 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 EMC9Q9Y3B6 208 aa12.15□□□□□ -0.46
SHMT2-228ENST00000557302 INTS1Q8N201 2190 aaKnown RBP12.15□□□□□ -0.47
SHMT2-228ENST00000557302 IGHV3-15A0A0B4J1V0 119 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 ZC3H12DA2A288 527 aaKnown RBP12.14□□□□□ -0.47
SHMT2-228ENST00000557302 TMEM229AB2RXF0 380 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 C19orf84I3L1E1 186 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 SMAD9O15198 467 aaKnown RBP12.14□□□□□ -0.47
SHMT2-228ENST00000557302 DNPH1O43598 174 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 TPST2O60704 377 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 SS18L1O75177 396 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-228ENST00000557302 PRKD3O94806 890 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 PNMTP11086 282 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 IDUAP35475 653 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 KIR2DL2P43627 348 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-228ENST00000557302 CTBP2P56545 445 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 OR2B6P58173 313 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 SLC25A3Q00325 362 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 BNIP2Q12982 314 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 GUSBP1Q15486 140 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 ALG10BQ5I7T1 473 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 SP5Q6BEB4 398 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-228ENST00000557302 HIST2H2BCQ6DN03 193 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 VWA1Q6PCB0 445 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 ULK3Q6PHR2 472 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 C6orf89Q6UWU4 347 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 FAM214BQ7L5A3 538 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 CARM1Q86X55 608 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 SLC43A2Q8N370 569 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 OR6T1Q8NGN1 323 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 RNF217Q8TC41 542 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 ABHD3Q8WU67 409 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 LZICQ8WZA0 190 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 DNAJA3Q96EY1 480 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 SLC47A1Q96FL8 570 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 POTEKPQ9BYX7 375 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 CLEC4AQ9UMR7 237 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 MED12LQ86YW9 2145 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 UNC79Q9P2D8 2635 aa12.14□□□□□ -0.47
SHMT2-228ENST00000557302 A0A0B4J2E0 115 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 A0A1B0GX12 115 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 B2RBV5 119 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 SMNDC1O75940 238 aaKnown RBP eCLIP12.13□□□□□ -0.47
SHMT2-228ENST00000557302 AHSA1O95433 338 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 GPIP06744 558 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 CALB2P22676 271 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 SLC35A1P78382 337 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 NPTX1Q15818 432 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 FBXL19-AS1Q494R0 122 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 SAMD4BQ5PRF9 694 aaKnown RBP12.13□□□□□ -0.47
SHMT2-228ENST00000557302 SWT1Q5T5J6 900 aaKnown RBP12.13□□□□□ -0.47
SHMT2-228ENST00000557302 C1orf140Q5VVS0 124 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 ZNF613Q6PF04 617 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 BTLAQ7Z6A9 289 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 LSRQ86X29 649 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms