RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 ARL5BQ96KC2 179 aa13.66□□□□□ -0.22
SHMT2-204ENST00000553324 ZNF317Q96PQ6 595 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-204ENST00000553324 PSD2Q9BQI7 771 aa13.66□□□□□ -0.22
SHMT2-204ENST00000553324 KLHL4Q9C0H6 718 aa13.66□□□□□ -0.22
SHMT2-204ENST00000553324 IKZF5Q9H5V7 419 aa13.66□□□□□ -0.22
SHMT2-204ENST00000553324 C12orf49Q9H741 205 aa13.66□□□□□ -0.22
SHMT2-204ENST00000553324 CHST2Q9Y4C5 530 aa13.66□□□□□ -0.22
SHMT2-204ENST00000553324 TACC2O95359 2948 aa13.66□□□□□ -0.22
SHMT2-204ENST00000553324 CSMD2Q7Z408 3487 aa13.66□□□□□ -0.22
SHMT2-204ENST00000553324 LRBAP50851 2863 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 HEATR5AQ86XA9 2040 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 IGHV3-15A0A0B4J1V0 119 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 TMEM72A0PK05 275 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 A8MVM7 634 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 SMAD9O15198 467 aaKnown RBP13.65□□□□□ -0.22
SHMT2-204ENST00000553324 CCDC22O60826 627 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 CNOT4O95628 575 aaKnown RBP13.65□□□□□ -0.22
SHMT2-204ENST00000553324 GPIP06744 558 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 P2RY6Q15077 328 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 TRMT5Q32P41 509 aaKnown RBP13.65□□□□□ -0.22
SHMT2-204ENST00000553324 INTS11Q5TA45 600 aaKnown RBP13.65□□□□□ -0.22
SHMT2-204ENST00000553324 CGB2Q6NT52 195 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 GALNT5Q7Z7M9 940 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 CDH24Q86UP0 819 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 LSMEM1Q8N8F7 131 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 WFIKKN1Q96NZ8 548 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 KAT8Q9H7Z6 458 aaKnown RBP13.65□□□□□ -0.22
SHMT2-204ENST00000553324 C12orf10Q9HB07 376 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 GID8Q9NWU2 228 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 RPS6KB2Q9UBS0 482 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 TESMINQ9Y4I5 508 aa13.65□□□□□ -0.22
SHMT2-204ENST00000553324 ANKHD1Q8IWZ3 2542 aaKnown RBP13.65□□□□□ -0.22
SHMT2-204ENST00000553324 IGKV3D-15A0A087WSY6 115 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 PSMB1P20618 241 aaKnown RBP13.64□□□□□ -0.23
SHMT2-204ENST00000553324 MTPNP58546 118 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 H3F3AP84243 136 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 NANOGP8Q6NSW7 305 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 TFAP2EQ6VUC0 442 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 STAC2Q6ZMT1 411 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 NUFIP2Q7Z417 695 aaKnown RBP13.64□□□□□ -0.23
SHMT2-204ENST00000553324 ARMC8Q8IUR7 673 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 C10orf111Q8N326 155 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 STEAP2Q8NFT2 490 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 OR8J3Q8NGG0 315 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 STK35Q8TDR2 534 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 DNAJA4Q8WW22 397 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-204ENST00000553324 LRRC58Q96CX6 371 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 ECSITQ9BQ95 431 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 TAPBPLQ9BX59 468 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 TRIM2Q9C040 744 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 OR11A1Q9GZK7 315 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 NANOGQ9H9S0 305 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 SELENONQ9NZV5 590 aa13.64□□□□□ -0.23
SHMT2-204ENST00000553324 ING1Q9UK53 422 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-204ENST00000553324 LOC100653049A0A140TA62 436 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 FBP2O00757 339 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 KRT34O76011 436 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 MFN2O95140 757 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 C8BP07358 591 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 PNMTP11086 282 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 PRG2P13727 222 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 FPR1P21462 350 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 IDUAP35475 653 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 OR3A2P47893 321 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 SLC16A1P53985 500 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 PCBP3P57721 371 aaKnown RBP13.63□□□□□ -0.23
SHMT2-204ENST00000553324 NCALDP61601 193 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 SF3A3Q12874 501 aaKnown RBP eCLIP13.63□□□□□ -0.231e-13■■■□□ 16.4
SHMT2-204ENST00000553324 ABLIM2Q6H8Q1 611 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 PAQR6Q6TCH4 344 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 C5orf46Q6UWT4 87 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 NET1Q7Z628 596 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-204ENST00000553324 PATL1Q86TB9 770 aaKnown RBP13.63□□□□□ -0.23
SHMT2-204ENST00000553324 CDC20BQ86Y33 519 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 PTOV1Q86YD1 416 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 ZNF100Q8IYN0 542 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 OR10A6Q8NH74 314 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 RP9Q8TA86 221 aaKnown RBP13.63□□□□□ -0.23
SHMT2-204ENST00000553324 RASSF5Q8WWW0 418 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 NINJ1Q92982 152 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 C3orf49Q96BT1 292 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 TMEM27Q9HBJ8 222 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 PARPBPQ9NWS1 579 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 AP3M1Q9Y2T2 418 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 CAPN7Q9Y6W3 813 aa13.63□□□□□ -0.23
SHMT2-204ENST00000553324 M0QX08 132 aa13.62□□□□□ -0.23
SHMT2-204ENST00000553324 MRASO14807 208 aa13.62□□□□□ -0.23
SHMT2-204ENST00000553324 HRGP04196 525 aa13.62□□□□□ -0.23
SHMT2-204ENST00000553324 IMPDH2P12268 514 aa13.62□□□□□ -0.23
SHMT2-204ENST00000553324 CRYGSP22914 178 aa13.62□□□□□ -0.23
SHMT2-204ENST00000553324 AQP1P29972 269 aa13.62□□□□□ -0.23
SHMT2-204ENST00000553324 ITGADQ13349 1161 aa13.62□□□□□ -0.23
SHMT2-204ENST00000553324 CAPRIN1Q14444 709 aaKnown RBP13.62□□□□□ -0.23
SHMT2-204ENST00000553324 SFRP5Q5T4F7 317 aa13.62□□□□□ -0.23
SHMT2-204ENST00000553324 FAM91A1Q658Y4 838 aa13.62□□□□□ -0.23
SHMT2-204ENST00000553324 ULK3Q6PHR2 472 aa13.62□□□□□ -0.23
SHMT2-204ENST00000553324 Q6ZT83 130 aa13.62□□□□□ -0.23
SHMT2-204ENST00000553324 SSX8Q7RTT4 187 aa13.62□□□□□ -0.23
SHMT2-204ENST00000553324 ATG4DQ86TL0 474 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-204ENST00000553324 GABRG1Q8N1C3 465 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms