RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PIGXQ8TBF5 258 aa13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 XAGE5Q8WWM1 108 aa13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 ROPN1LQ96C74 230 aa13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 PKNOX2Q96KN3 472 aa13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 PRR14Q9BWN1 585 aa13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 BEX2Q9BXY8 128 aa13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 SAP130Q9H0E3 1048 aa13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 CHODLQ9H9P2 273 aa13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 EML4Q9HC35 981 aaKnown RBP13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 SLC17A5Q9NRA2 495 aa13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 WDR45Q9Y484 360 aa13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 TMED7-TICAM2A0A0A6YYA0 188 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 IGHV4-61A0A0C4DH41 118 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 RNASET2O00584 256 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 ANKRD28O15084 1053 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 CPSF4O95639 269 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 AK1P00568 194 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 IDH2P48735 452 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 EFNA4P52798 201 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 DSCR9P59020 149 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 EMX2Q04743 252 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 SWI5Q1ZZU3 235 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 SAXO2Q658L1 398 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 CYB5R2Q6BCY4 276 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 ZNF544Q6NX49 715 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 CNPY4Q8N129 248 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 NATD1Q8N6N6 113 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 ANKS4BQ8N8V4 417 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 ANKFN1Q8N957 763 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 ZIC4Q8N9L1 334 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 FBXO17Q96EF6 278 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 ZNF385AQ96PM9 386 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 PRPF18Q99633 342 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 C19orf24Q9BVV8 132 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 C20orf27Q9GZN8 174 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 AKTIPQ9H8T0 292 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 SEC61A2Q9H9S3 476 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 TMEM160Q9NX00 188 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 ASIC5Q9NY37 505 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 TMEM181Q9P2C4 612 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 OSGIN1Q9UJX0 560 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 MOKQ9UQ07 419 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 TMED7Q9Y3B3 224 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 HDGFL3Q9Y3E1 203 aa13.51□□□□□ -0.25
CLSTN3-213ENST00000541953 DUXAA6NLW8 204 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 HMGN4O00479 90 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 KLF11O14901 512 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 LMX1BO60663 402 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 BPGMP07738 259 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 CHRM4P08173 479 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 USF1P22415 310 aaPredicted RBP13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 ETV4P43268 484 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 GGTLC2Q14390 218 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 SLC17A1Q14916 467 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 SYPL1Q16563 259 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 SPANXN4Q5MJ08 99 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 AP1ARQ63HQ0 302 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 BHLHB9Q6PI77 547 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 ZNF781Q8N8C0 355 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 OR8J2Q8NGG1 315 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 KIF18AQ8NI77 898 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 ARL8AQ96BM9 186 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 C3orf49Q96BT1 292 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 MSI2Q96DH6 328 aaKnown RBP13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 ZHX1-C8orf76Q96EF9 292 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 SLC38A1Q9H2H9 487 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 PPCSQ9HAB8 311 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 EXD2Q9NVH0 621 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 SLC35A3Q9Y2D2 325 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 TENM1Q9UKZ4 2725 aa13.5□□□□□ -0.25
CLSTN3-213ENST00000541953 IGHV1-18A0A0C4DH31 117 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 GPR171O14626 319 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 DNPH1O43598 174 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 CDH2P19022 906 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 TACR3P29371 465 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 MAGEA8P43361 318 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 TUBA1BP68363 451 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 TUBA4AP68366 448 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 KCNJ10P78508 379 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 LSM11P83369 360 aaKnown RBP eCLIP13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 MAPK11Q15759 364 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 FAM120AOSQ5T036 256 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 OR7E24Q6IFN5 339 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 TUBA1AQ71U36 451 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 LINGO2Q7L985 606 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 SSX8Q7RTT4 187 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 MYPOPQ86VE0 399 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 ARFGAP2Q8N6H7 521 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 TMEM99Q8N816 258 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 PROX1Q92786 737 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 NEURL3Q96EH8 262 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 TEX37Q96LM6 180 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 SHARPINQ9H0F6 387 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 EXOSC3Q9NQT5 275 aaKnown RBP13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 NOP53Q9NZM5 478 aaKnown RBP13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 LGALS13Q9UHV8 139 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 DCTN4Q9UJW0 460 aa13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 SPIN1Q9Y657 262 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-213ENST00000541953 TYROBPO43914 113 aa13.48□□□□□ -0.25
CLSTN3-213ENST00000541953 AKR7A3O95154 331 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms