RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 MRPS17Q9Y2R5 130 aaKnown RBP13.63□□□□□ -0.23
NUP54-217ENST00000514987 IER3IP1Q9Y5U9 82 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 NPFFR2Q9Y5X5 522 aa13.63□□□□□ -0.23
NUP54-217ENST00000514987 TRAV1-2A0A0B4J238 106 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 ELOA3DA6NLF2 546 aaPredicted RBP13.62□□□□□ -0.23
NUP54-217ENST00000514987 C17orf105B2RV13 164 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 PLA2G10O15496 165 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 SC5DO75845 299 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 NCR1O76036 304 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 IL33O95760 270 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 MRPL3P09001 348 aaKnown RBP13.62□□□□□ -0.23
NUP54-217ENST00000514987 APEHP13798 732 aaKnown RBP13.62□□□□□ -0.23
NUP54-217ENST00000514987 HPGDP15428 266 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 HIST1H1CP16403 213 aaKnown RBP13.62□□□□□ -0.23
NUP54-217ENST00000514987 APEX1P27695 318 aaKnown RBP13.62□□□□□ -0.23
NUP54-217ENST00000514987 RORAP35398 523 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 GRK6P43250 576 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 ELOA3BQ3SY89 546 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 CCDC58Q4VC31 144 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 C14orf28Q4W4Y0 310 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 IDNKQ5T6J7 187 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 HACD4Q5VWC8 232 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 ZNF687Q8N1G0 1237 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 ELOA3Q8NG57 546 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 OR6F1Q8NGZ6 308 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 OR4C3Q8NH37 302 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 OR14A16Q8NHC5 309 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 RLN3Q8WXF3 142 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 C3orf49Q96BT1 292 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 FRMD6Q96NE9 622 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 TGM7Q96PF1 710 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 CTRCQ99895 268 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 C12orf10Q9HB07 376 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 CYSLTR2Q9NS75 346 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 RBFOX1Q9NWB1 397 aaKnown RBP13.62□□□□□ -0.23
NUP54-217ENST00000514987 TDRD6O60522 2096 aaKnown RBP13.62□□□□□ -0.23
NUP54-217ENST00000514987 LINC00854A0A1B0GVQ3 168 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 ANKRD61A6NGH8 418 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 RHPN2P1A8MT19 583 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 B4DXG7 233 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 SCDO00767 359 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 IMPA2O14732 288 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 MBTPS2O43462 519 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 TMEM127O75204 238 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 TRIM3O75382 744 aaPredicted RBP13.62□□□□□ -0.23
NUP54-217ENST00000514987 GATBO75879 557 aaKnown RBP13.62□□□□□ -0.23
NUP54-217ENST00000514987 ARL6IP5O75915 188 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 CLUP10909 449 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 UBL4AP11441 157 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 HLA-DMAP28067 261 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 RBMS1P29558 406 aaKnown RBP13.62□□□□□ -0.23
NUP54-217ENST00000514987 OR12D2P58182 307 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 DCAF7P61962 342 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 RPS4XP62701 263 aaKnown RBP13.62□□□□□ -0.23
NUP54-217ENST00000514987 SLC3A1Q07837 685 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 CDONQ4KMG0 1287 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 FNDC7Q5VTL7 733 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 RPL22L1Q6P5R6 122 aaKnown RBP13.62□□□□□ -0.23
NUP54-217ENST00000514987 PLET1Q6UQ28 207 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 DUSP18Q8NEJ0 188 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 OR4K13Q8NH42 304 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 HAVCR2Q8TDQ0 301 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 SENP5Q96HI0 755 aaPredicted RBP13.62□□□□□ -0.23
NUP54-217ENST00000514987 TPSD1Q9BZJ3 242 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 OR2B2Q9GZK3 357 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 NRIP3Q9NQ35 241 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 SLCO1B1Q9Y6L6 691 aa13.62□□□□□ -0.23
NUP54-217ENST00000514987 LAMA3Q16787 3333 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 IGHV5-51A0A0C4DH38 117 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 MCIDASD6RGH6 385 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 E9PI62 339 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 GPRIN2O60269 458 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 CLPSP04118 112 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 NPR2P20594 1047 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 SHC1P29353 583 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 PYCR1P32322 319 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 SLC6A8P48029 635 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 E2F1Q01094 437 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 INSL4Q14641 139 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 ACSM3Q53FZ2 586 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 SLC35F2Q8IXU6 374 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 FAM160A2Q8N612 972 aaPredicted RBP13.61□□□□□ -0.23
NUP54-217ENST00000514987 SDR9C7Q8NEX9 313 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 GHSRQ92847 366 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 SMIM19Q96E16 107 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 PGLYRP3Q96LB9 341 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 SNX18Q96RF0 628 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 KCNJ15Q99712 375 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 NMNAT2Q9BZQ4 307 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 SPRTNQ9H040 489 aaPredicted RBP13.61□□□□□ -0.23
NUP54-217ENST00000514987 NEK6Q9HC98 313 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 CUTCQ9NTM9 273 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 RABL2AQ9UBK7 228 aaPredicted RBP13.61□□□□□ -0.23
NUP54-217ENST00000514987 EXTL2Q9UBQ6 330 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 ST6GALNAC2Q9UJ37 374 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 RABL2BQ9UNT1 228 aa13.61□□□□□ -0.23
NUP54-217ENST00000514987 FRG2CA6NGY1 282 aa13.6□□□□□ -0.23
NUP54-217ENST00000514987 ELK1P19419 428 aa13.6□□□□□ -0.23
NUP54-217ENST00000514987 SLC25A1P53007 311 aa13.6□□□□□ -0.23
NUP54-217ENST00000514987 SLC37A1P57057 533 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms