RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 TRIB1Q96RU8 372 aa13.46□□□□□ -0.25
NUP54-213ENST00000513352 PIP5K1AQ99755 562 aa13.46□□□□□ -0.25
NUP54-213ENST00000513352 TUBA1CQ9BQE3 449 aa13.46□□□□□ -0.25
NUP54-213ENST00000513352 PRDM14Q9GZV8 571 aa13.46□□□□□ -0.25
NUP54-213ENST00000513352 TP63Q9H3D4 680 aaPredicted RBP13.46□□□□□ -0.25
NUP54-213ENST00000513352 C12orf10Q9HB07 376 aa13.46□□□□□ -0.25
NUP54-213ENST00000513352 IL1RAPQ9NPH3 570 aa13.46□□□□□ -0.25
NUP54-213ENST00000513352 A4GNTQ9UNA3 340 aa13.46□□□□□ -0.25
NUP54-213ENST00000513352 ZNF835Q9Y2P0 537 aa13.46□□□□□ -0.25
NUP54-213ENST00000513352 A0A087WUJ7 227 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 TCRBV3S1A0A5B6 114 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 CLCA1A8K7I4 914 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 KPNA4O00629 521 aaPredicted RBP13.45□□□□□ -0.26
NUP54-213ENST00000513352 WDR1O75083 606 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 SEMA7AO75326 666 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 AHSA1O95433 338 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 SYNGR4O95473 234 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 THY1P04216 161 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 H1F0P07305 194 aaKnown RBP13.45□□□□□ -0.26
NUP54-213ENST00000513352 GABRA1P14867 456 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 FKBP2P26885 142 aaKnown RBP13.45□□□□□ -0.26
NUP54-213ENST00000513352 ACVR2AP27037 513 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 IDUAP35475 653 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 CARD18P57730 90 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 OR2B6P58173 313 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 MYBPHQ13203 477 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 CCNIQ14094 377 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 TRAM2Q15035 370 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 SF3B4Q15427 424 aaKnown RBP eCLIP13.45□□□□□ -0.26
NUP54-213ENST00000513352 EIF2S3LQ2VIR3 472 aaKnown RBP13.45□□□□□ -0.26
NUP54-213ENST00000513352 C1orf185Q5T7R7 199 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 C1orf140Q5VVS0 124 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 WDR88Q6ZMY6 472 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 Q6ZPB1 254 aaPredicted RBP13.45□□□□□ -0.26
NUP54-213ENST00000513352 P4HA3Q7Z4N8 544 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 DOLPP1Q86YN1 238 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 NKAIN4Q8IVV8 208 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 OR10D3Q8NH80 312 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 STK35Q8TDR2 534 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 TMEM255BQ8WV15 326 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 OSTF1Q92882 214 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 MPP4Q96JB8 637 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 ARL5BQ96KC2 179 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 TAPBPLQ9BX59 468 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 PRRG4Q9BZD6 226 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 TIGARQ9NQ88 270 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 KIAA1549Q9HCM3 1950 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 ZNF462Q96JM2 2506 aa13.45□□□□□ -0.26
NUP54-213ENST00000513352 AHRRA9YTQ3 701 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 SULT2B1O00204 365 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 FFAR1O14842 300 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 GADD45GO95257 159 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 LYPD3O95274 346 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 THRBP10828 461 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 CBLP22681 906 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 GTF2E2P29084 291 aaKnown RBP13.44□□□□□ -0.26
NUP54-213ENST00000513352 RRM2P31350 389 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 RPS5P46782 204 aaKnown RBP13.44□□□□□ -0.26
NUP54-213ENST00000513352 DIO1P49895 249 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 MAP2K6P52564 334 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 CSNK2A1P68400 391 aaPredicted RBP13.44□□□□□ -0.26
NUP54-213ENST00000513352 OR7A5Q15622 319 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 CTU2Q2VPK5 515 aaKnown RBP13.44□□□□□ -0.26
NUP54-213ENST00000513352 ACSF3Q4G176 576 aaPredicted RBP13.44□□□□□ -0.26
NUP54-213ENST00000513352 EMC4Q5J8M3 183 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 PLXDC2Q6UX71 529 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 RPTNQ6XPR3 784 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 ZNF771Q7L3S4 317 aaPredicted RBP13.44□□□□□ -0.26
NUP54-213ENST00000513352 TSEN54Q7Z6J9 526 aaKnown RBP13.44□□□□□ -0.26
NUP54-213ENST00000513352 OR52J3Q8NH60 311 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 SLC25A36Q96CQ1 311 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 ZHX1-C8orf76Q96EF9 292 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 ZNF845Q96IR2 970 aaPredicted RBP13.44□□□□□ -0.26
NUP54-213ENST00000513352 ZNF347Q96SE7 839 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 EPYCQ99645 322 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 CHID1Q9BWS9 393 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 YY1AP1Q9H869 796 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 COQ10BQ9H8M1 238 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 NMNAT1Q9HAN9 279 aaPredicted RBP13.44□□□□□ -0.26
NUP54-213ENST00000513352 PAQR5Q9NXK6 330 aaPredicted RBP13.44□□□□□ -0.26
NUP54-213ENST00000513352 C6orf203Q9P0P8 240 aaPredicted RBP13.44□□□□□ -0.26
NUP54-213ENST00000513352 HDGFL3Q9Y3E1 203 aa13.44□□□□□ -0.26
NUP54-213ENST00000513352 IGKV1D-42A0A075B6H8 117 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 TRAV36DV7A0A075B6V5 113 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 CCL21O00585 134 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 ADAMDEC1O15204 470 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 FKBP6O75344 327 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 CA7P43166 264 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 CLK1P49759 484 aaKnown RBP13.43□□□□□ -0.26
NUP54-213ENST00000513352 SMIM11AP58511 58 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 PON3Q15166 354 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 C5orf46Q6UWT4 87 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 ZNF730Q6ZMV8 503 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 TMPPEQ6ZT21 453 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 RRM2BQ7LG56 351 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 ZPLD1Q8TCW7 415 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 TMEM239Q8WW34 195 aa13.43□□□□□ -0.26
NUP54-213ENST00000513352 CPNE4Q96A23 557 aaPredicted RBP13.43□□□□□ -0.26
NUP54-213ENST00000513352 KTI12Q96EK9 354 aaPredicted RBP13.43□□□□□ -0.26
NUP54-213ENST00000513352 ADGRG7Q96K78 797 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms