RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 LIPJQ5W064 366 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 LIN54Q6MZP7 749 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 C8orf82Q6P1X6 216 aaPredicted RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 SBSNQ6UWP8 590 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 IL20RBQ6UXL0 311 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 FRA10AC1Q70Z53 315 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 PRSS41Q7RTY9 318 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 PAGE2Q7Z2X7 111 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 PIWIL4Q7Z3Z4 852 aaKnown RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 SERPINA11Q86U17 422 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 GPR180Q86V85 440 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 PLD3Q8IV08 490 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.46□□□□□ -1.86
USP54-217ENST00000498213 ZDHHC23Q8IYP9 409 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 KIF2BQ8N4N8 673 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 ZNF441Q8N8Z8 693 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 NAT8LQ8N9F0 302 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 SCAIQ8N9R8 606 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 VPS37AQ8NEZ2 397 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 TNIP2Q8NFZ5 429 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 RHEBL1Q8TAI7 183 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 ZCCHC10Q8TBK6 192 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 STAG3L4Q8TBR4 150 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 SPPL2AQ8TCT8 520 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 ACTRT1Q8TDG2 376 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 ZNF721Q8TF20 911 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 EEF1AKMT1Q8WVE0 214 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 CDKL2Q92772 493 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 ABTB1Q969K4 478 aaPredicted RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 RHBDF1Q96CC6 855 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 CERS2Q96G23 380 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 SENP5Q96HI0 755 aaPredicted RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 RADILQ96JH8 1075 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 OR4K3Q96R72 315 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 OR2B2Q9GZK3 357 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 STMN4Q9H169 189 aaPredicted RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 RPF2Q9H7B2 306 aaKnown RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 DDX31Q9H8H2 851 aaKnown RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 ACTR8Q9H981 624 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 PLSCR4Q9NRQ2 329 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 PNO1Q9NRX1 252 aaKnown RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 DNAJC11Q9NVH1 559 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 NMRK1Q9NWW6 199 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 AHSPQ9NZD4 102 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 RNF14Q9UBS8 474 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 PRODH2Q9UF12 536 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 ZNF223Q9UK11 482 aaPredicted RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 GUCA1BQ9UMX6 200 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 EXO1Q9UQ84 846 aaKnown RBP3.46□□□□□ -1.86
USP54-217ENST00000498213 RCE1Q9Y256 329 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 C15orf41Q9Y2V0 281 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 WIF1Q9Y5W5 379 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 LIPGQ9Y5X9 500 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 DSCAMO60469 2012 aa3.46□□□□□ -1.86
USP54-217ENST00000498213 A0A096LNT2 108 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 A0A096LPK6 155 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 C15orf38-AP3S2A0A0A6YYH1 394 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 C2orf92A0A1B0GVN3 265 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 ATP6AP2A0A1C7CYW4 349 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 PLSCR5A0PG75 271 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 RBMY1BA6NDE4 496 aaKnown RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 RBMY1EA6NEQ0 496 aaKnown RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 OR6C70A6NIJ9 312 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 FAM166BA8MTA8 275 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 H0Y3Z8 333 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 C16orf97H3BN30 126 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 HSPB6O14558 160 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 EIF3HO15372 352 aaKnown RBP eCLIP3.45□□□□□ -1.86
USP54-217ENST00000498213 ATP6AP2O75787 350 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 SERPINI2O75830 405 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 HSPA4LO95757 839 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 GPR75O95800 540 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 FTCDO95954 541 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 IL1AP01583 271 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 IGHV4-39P01824 125 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 KRT14P02533 472 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 ATP1B1P05026 303 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 SERPIND1P05546 499 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 CSF3P09919 207 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 RBMY1DP0C7P1 496 aaKnown RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 DRD5P21918 477 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 CPN2P22792 545 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 CRYGSP22914 178 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 ATP5A1P25705 553 aaKnown RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 SRD5A2P31213 254 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 CD79BP40259 229 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 HTR3AP46098 478 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 AMTP48728 403 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 ZNF136P52737 540 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 PSMD4P55036 377 aaKnown RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 RAB8AP61006 207 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 RPS3AP61247 264 aaKnown RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 GNG11P61952 73 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 TRA2BP62995 288 aaKnown RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 TNFRSF17Q02223 184 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 CUL1Q13616 776 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 RUNX2Q13950 521 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 EFR3AQ14156 821 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 HNF4GQ14541 408 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 EBPQ15125 230 aaKnown RBP3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms