RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 VANGL1Q8TAA9 524 aaPredicted RBP13.18□□□□□ -0.3
USP4-212ENST00000486549 SLC35B4Q969S0 331 aa13.18□□□□□ -0.3
USP4-212ENST00000486549 C3orf49Q96BT1 292 aa13.18□□□□□ -0.3
USP4-212ENST00000486549 TAMM41Q96BW9 452 aa13.18□□□□□ -0.3
USP4-212ENST00000486549 ZNF583Q96ND8 569 aa13.18□□□□□ -0.3
USP4-212ENST00000486549 CCT8L2Q96SF2 557 aa13.18□□□□□ -0.3
USP4-212ENST00000486549 PRR14Q9BWN1 585 aa13.18□□□□□ -0.3
USP4-212ENST00000486549 C12orf49Q9H741 205 aa13.18□□□□□ -0.3
USP4-212ENST00000486549 CMTM6Q9NX76 183 aa13.18□□□□□ -0.3
USP4-212ENST00000486549 GALNT8Q9NY28 637 aa13.18□□□□□ -0.3
USP4-212ENST00000486549 GMPR2Q9P2T1 348 aaKnown RBP13.18□□□□□ -0.3
USP4-212ENST00000486549 MYO9AB2RTY4 2548 aa13.18□□□□□ -0.3
USP4-212ENST00000486549 M0R3H8 397 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 ZNF208O43345 1280 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 PRKD3O94806 890 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 PMS2P2O95744 297 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 PRDX6P30041 224 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 AGTR1P30556 359 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 SLC7A2P52569 658 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 RNPS1Q15287 305 aaKnown RBP13.17□□□□□ -0.3
USP4-212ENST00000486549 DUSP7Q16829 419 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 FBXL19-AS1Q494R0 122 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 TUSC5Q8IXB3 177 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 SLC15A3Q8IY34 581 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 ACBD4Q8NC06 268 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 OR2T12Q8NG77 320 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 GPR32P1Q8NGA4 272 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 OR6K3Q8NGY3 331 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 RNF217Q8TC41 542 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 ZHX1-C8orf76Q96EF9 292 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 WFDC6Q9BQY6 131 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 GPATCH1Q9BRR8 931 aaKnown RBP13.17□□□□□ -0.3
USP4-212ENST00000486549 GLRX2Q9NS18 164 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 FAM53CQ9NYF3 392 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 TESQ9UGI8 421 aaKnown RBP13.17□□□□□ -0.3
USP4-212ENST00000486549 HDGFL3Q9Y3E1 203 aa13.17□□□□□ -0.3
USP4-212ENST00000486549 A0A1B0GWA3 101 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 ELOA3DA6NLF2 546 aaPredicted RBP13.16□□□□□ -0.3
USP4-212ENST00000486549 A8MXE2 369 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 MSTNO14793 375 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 DCTN3O75935 186 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 IMPDH2P12268 514 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 CD247P20963 164 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 FKBP2P26885 142 aaKnown RBP13.16□□□□□ -0.3
USP4-212ENST00000486549 KCNJ5P48544 419 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 CLK1P49759 484 aaKnown RBP13.16□□□□□ -0.3
USP4-212ENST00000486549 LIPEQ05469 1076 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 RASGEF1BQ0VAM2 473 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 EXOC3L2Q2M3D2 409 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 ELOA3BQ3SY89 546 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 LRRC23Q53EV4 343 aaPredicted RBP13.16□□□□□ -0.3
USP4-212ENST00000486549 TMEM201Q5SNT2 666 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 ATG4DQ86TL0 474 aaPredicted RBP13.16□□□□□ -0.3
USP4-212ENST00000486549 RANBP3LQ86VV4 465 aaPredicted RBP13.16□□□□□ -0.3
USP4-212ENST00000486549 MICU2Q8IYU8 434 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 SLC43A2Q8N370 569 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 ZNF610Q8N9Z0 462 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 ELOA3Q8NG57 546 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 LRRC37BQ96QE4 947 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 ARHGDIGQ99819 225 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 HOPXQ9BPY8 73 aaPredicted RBP13.16□□□□□ -0.3
USP4-212ENST00000486549 ZNF559Q9BR84 538 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 TRIM2Q9C040 744 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 TMEM181Q9P2C4 612 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 KLHL9Q9P2J3 617 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 KLHL13Q9P2N7 655 aa13.16□□□□□ -0.3
USP4-212ENST00000486549 FOXD3Q9UJU5 478 aaPredicted RBP13.16□□□□□ -0.3
USP4-212ENST00000486549 ANKHD1Q8IWZ3 2542 aaKnown RBP13.15□□□□□ -0.3
USP4-212ENST00000486549 ELOVL7A1L3X0 281 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 A8MVM7 634 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 NME4O00746 187 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 CYTIPO60759 359 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 LGI1O95970 557 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 CGAP01215 116 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 CD8BP10966 210 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 IDUAP35475 653 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 MAP2K6P52564 334 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 CRYBA2P53672 197 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 PSME3P61289 254 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 SLC35A1P78382 337 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 VEZF1Q14119 521 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 OR7A5Q15622 319 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 NRF1Q16656 503 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 ALG10BQ5I7T1 473 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 GKAP1Q5VSY0 366 aaPredicted RBP13.15□□□□□ -0.3
USP4-212ENST00000486549 ZNF474Q6S9Z5 364 aaPredicted RBP13.15□□□□□ -0.3
USP4-212ENST00000486549 HACD2Q6Y1H2 254 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 CCDC80Q76M96 950 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 NUFIP2Q7Z417 695 aaKnown RBP13.15□□□□□ -0.3
USP4-212ENST00000486549 KIF18BQ86Y91 864 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 ZNF775Q96BV0 537 aaPredicted RBP13.15□□□□□ -0.3
USP4-212ENST00000486549 LURAP1Q96LR2 239 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 ZNF300Q96RE9 604 aaPredicted RBP13.15□□□□□ -0.3
USP4-212ENST00000486549 PSD2Q9BQI7 771 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 TMEM27Q9HBJ8 222 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 MCCC2Q9HCC0 563 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 SELENONQ9NZV5 590 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 KCNN3Q9UGI6 736 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 AP3M1Q9Y2T2 418 aa13.15□□□□□ -0.3
USP4-212ENST00000486549 ABCA12Q86UK0 2595 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms