RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 NAT8LQ8N9F0 302 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC22A7Q9Y694 548 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 RD3LP0DJH9 198 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 GGT5P36269 586 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 TMEM244Q5VVB8 128 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 NRMQ8IXM6 262 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 C2CD4CQ8TF44 421 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 AKT1S1Q96B36 256 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 PIK3C2BO00750 1634 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 HSPB6O14558 160 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 C4BPAP04003 597 aaKnown RBP12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 KRTDAPP60985 99 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 IQCJQ1A5X6 159 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 CLEC9AQ6UXN8 241 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 KIAA1958Q8N8K9 716 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 BORCS6Q96GS4 357 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 FAXDC2Q96IV6 333 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 NUDT22Q9BRQ3 303 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 MED18Q9BUE0 208 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 UCK1Q9HA47 277 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 TRAPPC2LQ9UL33 140 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 UMAD1C9J7I0 102 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 OR13C7P0DN81 318 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 CCKARP32238 428 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 KEAP1Q14145 624 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 MAMDC4Q6UXC1 1216 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 CMASQ8NFW8 434 aaPredicted RBP12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 CREB3L4Q8TEY5 395 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 ECHDC3Q96DC8 303 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 C11orf84Q9BUA3 381 aaPredicted RBP12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 CRXO43186 299 aaPredicted RBP12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC16A7O60669 478 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 ZNF623O75123 536 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 ACSM1Q08AH1 577 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 SERINC5Q86VE9 423 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 OR4F5Q8NH21 305 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 SH3RF2Q8TEC5 729 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 SECTM1Q8WVN6 248 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 OR4F4Q96R69 305 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 GPR20Q99678 358 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 NGBQ9NPG2 151 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 USP36Q9P275 1121 aaKnown RBP12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 HEATR5BQ9P2D3 2071 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC16A5O15375 505 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 VEGFAP15692 232 aaPredicted RBP12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 CD1CP29017 333 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 XCR1P46094 333 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 C6orf89Q6UWU4 347 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 C4orf36Q96KX1 117 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 FEVQ99581 238 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 C12orf57Q99622 126 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 PLK3Q9H4B4 646 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 NLE1Q9NVX2 485 aaPredicted RBP12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 GPR34Q9UPC5 381 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 KPTNQ9Y664 436 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 NDUFB2O95178 105 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 CHRM4P08173 479 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 AGTR2P50052 363 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 TAS2R38P59533 333 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 OR8B8Q15620 311 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 RNF175Q8N4F7 328 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 NLGN4YQ8NFZ3 816 aaPredicted RBP12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 OTX2P32243 289 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 RPS5P46782 204 aaKnown RBP12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 RAB40BQ12829 278 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 TPGS2Q68CL5 300 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC38A6Q8IZM9 456 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 EGLN3Q9H6Z9 239 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 CNR2P34972 360 aa12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 PSMB2P49721 201 aa12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 WDR5BQ86VZ2 330 aa12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 FUBP3Q96I24 572 aaKnown RBP eCLIP12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 DPH2Q9BQC3 489 aaPredicted RBP12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 ERCC6L2Q5T890 1561 aa12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 EOMESO95936 686 aa12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 BPIFB2Q8N4F0 458 aa12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 FIBINQ8TAL6 211 aa12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 SAMD8Q96LT4 415 aa12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 LINC00597Q9H2U6 94 aa12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 MTHFD2LQ9H903 347 aaPredicted RBP12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 PGAP2Q9UHJ9 254 aa12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 RASD1Q9Y272 281 aa12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 DUOX1Q9NRD9 1551 aa12.52□□□□□ -0.4
CCDC88A-204ENST00000413716 MCRIP1C9JLW8 97 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 SOCS5O75159 536 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 ADRB1P08588 477 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 HBQ1P09105 142 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 PDZK1IP1Q13113 114 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNF684Q5T5D7 378 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 SLC6A19Q695T7 634 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 OR4C11Q6IEV9 310 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 CATSPERGQ6ZRH7 1159 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 NECAP1Q8NC96 275 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 EMC7Q9NPA0 242 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 TEX264Q9Y6I9 313 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 PPRC1Q5VV67 1664 aaKnown RBP12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 ADGRA1Q86SQ6 560 aa12.52□□□□□ -0.41
CCDC88A-204ENST00000413716 OR5K4A6NMS3 321 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms