RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 STAT5AP42229 794 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 RAP2BP61225 183 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 GUCA2BQ16661 112 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 LIN54Q6MZP7 749 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 FAM98AQ8NCA5 519 aaKnown RBP13.27□□□□□ -0.29
SDC1-201ENST00000254351 FIBINQ8TAL6 211 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 TFGQ92734 400 aaPredicted RBP13.27□□□□□ -0.29
SDC1-201ENST00000254351 KISS1RQ969F8 398 aaPredicted RBP13.27□□□□□ -0.29
SDC1-201ENST00000254351 AHCYL2Q96HN2 611 aaKnown RBP13.27□□□□□ -0.29
SDC1-201ENST00000254351 AIF1LQ9BQI0 150 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 PINK1Q9BXM7 581 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 OPN4Q9UHM6 478 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 TMEM200CA6NKL6 621 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 HIST1H2ABP04908 130 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 RPLP2P05387 115 aaKnown RBP13.26□□□□□ -0.29
SDC1-201ENST00000254351 IFNGR1P15260 489 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 CERS1P27544 350 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 FAM46CQ5VWP2 391 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 ZC3H14Q6PJT7 736 aaKnown RBP13.26□□□□□ -0.29
SDC1-201ENST00000254351 HIST3H2AQ7L7L0 130 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 ZNF547Q8IVP9 402 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 LINC00471Q8N535 108 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 OR52E2Q8NGJ4 325 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 NANPQ8TBE9 248 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 ADAMTS15Q8TE58 950 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 HIST1H2ACQ93077 130 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 GPN1Q9HCN4 374 aaPredicted RBP13.26□□□□□ -0.29
SDC1-201ENST00000254351 ZNF304Q9HCX3 659 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 FRMPD3Q5JV73 1810 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 A0A1B0GTH9 108 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 A0A1B0GUH1 482 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 GIPP09681 153 aaPredicted RBP13.26□□□□□ -0.29
SDC1-201ENST00000254351 ART1P52961 327 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 MBOAT2Q6ZWT7 520 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 GAREM2Q75VX8 874 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 SLC16A13Q7RTY0 426 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 DEFB128Q7Z7B8 93 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 TPRA1Q86W33 373 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 FAM129CQ86XR2 697 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 FAM219AQ8IW50 185 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 OR4C6Q8NH72 309 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 BRIX1Q8TDN6 353 aaKnown RBP13.26□□□□□ -0.29
SDC1-201ENST00000254351 ZNF471Q9BX82 626 aaPredicted RBP13.26□□□□□ -0.29
SDC1-201ENST00000254351 PBX4Q9BYU1 374 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 ADGRL4Q9HBW9 690 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 A0A1W2PR48 441 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 FAM86C2PA6NEL3 165 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 C4orf51C9J302 202 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 F5H5P2 479 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 SELENOFO60613 162 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 B3GALNT1O75752 331 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 RASGRP1O95267 797 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 F3P13726 295 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 RPS27P42677 84 aaKnown RBP13.26□□□□□ -0.29
SDC1-201ENST00000254351 UBE2IP63279 158 aaKnown RBP13.26□□□□□ -0.29
SDC1-201ENST00000254351 ACSM1Q08AH1 577 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 EIF2B5Q13144 721 aaKnown RBP13.26□□□□□ -0.29
SDC1-201ENST00000254351 CBFBQ13951 182 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 PRRT3Q5FWE3 981 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 MRM1Q6IN84 353 aaKnown RBP13.26□□□□□ -0.29
SDC1-201ENST00000254351 UNQ6126/PRO20091Q6UXV3 157 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 CDH26Q8IXH8 852 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 UBE2E3Q969T4 207 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 C3orf49Q96BT1 292 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 SLC25A38Q96DW6 304 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 WDR13Q9H1Z4 485 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 CACYBPQ9HB71 228 aaKnown RBP13.26□□□□□ -0.29
SDC1-201ENST00000254351 ASF1BQ9NVP2 202 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 FBXO34Q9NWN3 711 aa13.26□□□□□ -0.29
SDC1-201ENST00000254351 MAN2B1O00754 1011 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 SRMP19623 302 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 P2RX1P51575 399 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 RBMS2Q15434 407 aaKnown RBP13.25□□□□□ -0.29
SDC1-201ENST00000254351 TAF13Q15543 124 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 NDUFAF6Q330K2 333 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 OR4C11Q6IEV9 310 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 FRRS1Q6ZNA5 592 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 GID4Q8IVV7 300 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 PELI1Q96FA3 418 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 PELOQ9BRX2 385 aaKnown RBP13.25□□□□□ -0.29
SDC1-201ENST00000254351 CRB3Q9BUF7 120 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 PTDSS2Q9BVG9 487 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 ZDHHC5Q9C0B5 715 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 ZMAT3Q9HA38 289 aaKnown RBP13.25□□□□□ -0.29
SDC1-201ENST00000254351 SLC23A2Q9UGH3 650 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 FBXO4Q9UKT5 387 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 ENTPD4Q9Y227 616 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 RIIAD1A6NNX1 92 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 C4orf47A7E2U8 309 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 J3QRE1 110 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 PVALBP20472 110 aaPredicted RBP13.25□□□□□ -0.29
SDC1-201ENST00000254351 DYRK1AQ13627 763 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 TCTN1Q2MV58 587 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 TMEM215Q68D42 235 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 SLC8B1Q6J4K2 584 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 Q6ZNB5 142 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 MRGPREQ86SM8 312 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 RASGRP3Q8IV61 690 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 OR51S1Q8NGJ8 323 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 OR5M9Q8NGP3 310 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms