RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 FUNDC1Q8IVP5 155 aa15.81■□□□□ 0.12
SHKBP1-204ENST00000594862 ZNF524Q96C55 264 aa15.81■□□□□ 0.12
SHKBP1-204ENST00000594862 DDIT4LQ96D03 193 aa15.81■□□□□ 0.12
SHKBP1-204ENST00000594862 TMEM19Q96HH6 336 aa15.81■□□□□ 0.12
SHKBP1-204ENST00000594862 WFIKKN1Q96NZ8 548 aa15.81■□□□□ 0.12
SHKBP1-204ENST00000594862 KLHL4Q9C0H6 718 aa15.81■□□□□ 0.12
SHKBP1-204ENST00000594862 CTPS2Q9NRF8 586 aa15.81■□□□□ 0.12
SHKBP1-204ENST00000594862 KLHL28Q9NXS3 571 aa15.81■□□□□ 0.12
SHKBP1-204ENST00000594862 TRAPPC4Q9Y296 219 aa15.81■□□□□ 0.12
SHKBP1-204ENST00000594862 ZNF443Q9Y2A4 671 aaPredicted RBP15.81■□□□□ 0.12
SHKBP1-204ENST00000594862 A0A1W2PP18 115 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 CLDN24A6NM45 220 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 EVPLLA8MZ36 301 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 SMAD9O15198 467 aaKnown RBP15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 BCAS1O75363 584 aaPredicted RBP15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 RAF1P04049 648 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 FESP07332 822 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 HOXB9P17482 250 aaPredicted RBP15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 PSMB1P20618 241 aaKnown RBP15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 PLAURQ03405 335 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 RASGEF1BQ0VAM2 473 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 P2RY6Q15077 328 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 TESK1Q15569 626 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 MAPK11Q15759 364 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 AGKQ53H12 422 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 METTL21CQ5VZV1 264 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 HMGN2P46Q86SG4 172 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 MTDHQ86UE4 582 aaKnown RBP15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 TUSC5Q8IXB3 177 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 STEAP2Q8NFT2 490 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 PIGXQ8TBF5 258 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 TSPEARQ8WU66 669 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 FOXC2Q99958 501 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 PSD2Q9BQI7 771 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 SPATA9Q9BWV2 254 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 C12orf49Q9H741 205 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 MTORP42345 2549 aa15.8■□□□□ 0.12
SHKBP1-204ENST00000594862 TMED7-TICAM2A0A0A6YYA0 188 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 GPR171O14626 319 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 EIF1BO60739 113 aaKnown RBP15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 SASH3O75995 380 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 CNOT4O95628 575 aaKnown RBP15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 ETS2P15036 469 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 ART1P52961 327 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 GCNT6Q5T4J0 391 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 ABLIM2Q6H8Q1 611 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 TFAP2EQ6VUC0 442 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 STAC2Q6ZMT1 411 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 ZNF836Q6ZNA1 936 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 SSX8Q7RTT4 187 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 ADGRG3Q86Y34 549 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 KRT73Q86Y46 540 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 MBD6Q96DN6 1003 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 SPATA5L1Q9BVQ7 753 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 NPHS2Q9NP85 383 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 TMEM181Q9P2C4 612 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 LEF1Q9UJU2 399 aaPredicted RBP15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 TMED7Q9Y3B3 224 aa15.79■□□□□ 0.12
SHKBP1-204ENST00000594862 IGKV3D-15A0A087WSY6 115 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 AP3D1O14617 1153 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 ANGPT2O15123 496 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 TROVE2P10155 538 aaKnown RBP eCLIP15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 NCF2P19878 526 aaPredicted RBP15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 TACR3P29371 465 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 IST1P53990 364 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 NR1H2P55055 460 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 SLC35A1P78382 337 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 KEAP1Q14145 624 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 HSP90B2PQ58FF3 399 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 WBP2NLQ6ICG8 309 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 GALNT5Q7Z7M9 940 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 NRGNQ92686 78 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 ALPK1Q96QP1 1244 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 PLEKHF2Q9H8W4 249 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 SLC25A37Q9NYZ2 338 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 DCTN4Q9UJW0 460 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 OSGIN1Q9UJX0 560 aa15.78■□□□□ 0.12
SHKBP1-204ENST00000594862 MPDZO75970 2070 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 TRBV5-3A0A0A0MS03 114 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 IGHV3-15A0A0B4J1V0 119 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 ADAM11O75078 769 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 ARAFP10398 606 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 IL32P24001 234 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 CXCR1P25024 350 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 PRKAR1BP31321 381 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 OR3A2P47893 321 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 POU4F3Q15319 338 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 BEX5Q5H9J7 111 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 ZNF311Q5JNZ3 666 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 RPS26P11Q5JNZ5 115 aaPredicted RBP15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 REEP3Q6NUK4 255 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 Q6ZT83 130 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 VRK2Q86Y07 508 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 GABRG1Q8N1C3 465 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 BHLHE22Q8NFJ8 381 aaPredicted RBP15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 NAA11Q9BSU3 229 aaPredicted RBP15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 ACTR6Q9GZN1 396 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 ADAM19Q9H013 955 aa15.77■□□□□ 0.12
SHKBP1-204ENST00000594862 CXXC4Q9H2H0 198 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms