RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 DAG1Q14118 895 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 TOMM20Q15388 145 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 SEC23BQ15437 767 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 TMEM44Q2T9K0 475 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 LINC00303Q3SY05 128 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 LPCAT4Q643R3 524 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 PPP4R4Q6NUP7 873 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 WDR88Q6ZMY6 472 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 ADGRG3Q86Y34 549 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 FAM109AQ8N4B1 249 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 CBR4Q8N4T8 237 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 TMEM251Q8N6I4 163 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 POC1BQ8TC44 478 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 STK35Q8TDR2 534 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 SLC25A43Q8WUT9 341 aaPredicted RBP9.72□□□□□ -0.85
SS18-213ENST00000579640 KLHL4Q9C0H6 718 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 USE1Q9NZ43 259 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 KIF17Q9P2E2 1029 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 CHRNA9Q9UGM1 479 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 B3GNT3Q9Y2A9 372 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 TMEM5Q9Y2B1 443 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 TP53TG5Q9Y2B4 290 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 ZFHX4Q86UP3 3567 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 ANKRD11Q6UB99 2663 aaPredicted RBP9.72□□□□□ -0.85
SS18-213ENST00000579640 A8MVM7 634 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 PDLIM1O00151 329 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 SUSD5O60279 629 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 TRAPPC6AO75865 159 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 ADAP00813 363 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 CLK1P49759 484 aaKnown RBP9.72□□□□□ -0.85
SS18-213ENST00000579640 ALDH3A2P51648 485 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 UGT2B15P54855 530 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 CTBP2P56545 445 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 PPIAP62937 165 aaKnown RBP9.72□□□□□ -0.85
SS18-213ENST00000579640 PPP2R2BQ00005 443 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 PRKCDQ05655 676 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 FOXD4Q12950 439 aaPredicted RBP9.72□□□□□ -0.85
SS18-213ENST00000579640 LAPTM4AQ15012 233 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 OTUD3Q5T2D3 398 aaPredicted RBP9.72□□□□□ -0.85
SS18-213ENST00000579640 RAET1LQ5VY80 246 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 ZNF770Q6IQ21 691 aaPredicted RBP9.72□□□□□ -0.85
SS18-213ENST00000579640 C3orf33Q6P1S2 294 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 C1orf94Q6P1W5 598 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 PGBD2Q6P3X8 592 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 FAHD1Q6P587 224 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 NRMQ8IXM6 262 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 CDK20Q8IZL9 346 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 ATG16L2Q8NAA4 619 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 AQP11Q8NBQ7 271 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 FAM83FQ8NEG4 500 aaPredicted RBP9.72□□□□□ -0.85
SS18-213ENST00000579640 OR14L1PQ8NHC6 308 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 NRG4Q8WWG1 115 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 DDIT4LQ96D03 193 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 BARD1Q99728 777 aaKnown RBP9.72□□□□□ -0.85
SS18-213ENST00000579640 DGCR6LQ9BY27 220 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 COQ10BQ9H8M1 238 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 ZNF556Q9HAH1 456 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 ACKR4Q9NPB9 350 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 IGKV1D-42A0A075B6H8 117 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 TMEM72A0PK05 275 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 FAM166BA8MTA8 275 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 H0YJX3 145 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 K7EM74 188 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 SOCS2O14508 198 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 EI24O14681 340 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 SFTPCP11686 197 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 ZNF26P17031 533 aaPredicted RBP9.71□□□□□ -0.85
SS18-213ENST00000579640 CBLP22681 906 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 LRRC36Q1X8D7 754 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 RFX4Q33E94 735 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 TBPL2Q6SJ96 375 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 HS3ST5Q8IZT8 346 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 OR9Q2Q8NGE9 314 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 OR6S1Q8NH40 331 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 GNPDA2Q8TDQ7 276 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 PNPLA2Q96AD5 504 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 FEVQ99581 238 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 POTEKPQ9BYX7 375 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 ENOPH1Q9UHY7 261 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 RPH3AQ9Y2J0 694 aaPredicted RBP9.71□□□□□ -0.85
SS18-213ENST00000579640 ORC6Q9Y5N6 252 aa9.71□□□□□ -0.85
SS18-213ENST00000579640 MAGED1Q9Y5V3 778 aaPredicted RBP9.71□□□□□ -0.85
SS18-213ENST00000579640 MAP1BP46821 2468 aaKnown RBP9.71□□□□□ -0.86
SS18-213ENST00000579640 FRYQ5TBA9 3013 aa9.71□□□□□ -0.86
SS18-213ENST00000579640 TRAV36DV7A0A075B6V5 113 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 OR2M5A3KFT3 312 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 GJE1A6NN92 205 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 OR2T1O43869 369 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 NPIPB7O75200 414 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 ALPLP05186 524 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 FAM87AP0C7U9 286 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 IFI30P13284 250 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 ZNF24P17028 368 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 GSTM3P21266 225 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 PRKACGP22612 351 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 CHMP24386 653 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 FPR3P25089 353 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 RFC3P40938 356 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 MAGEA5P43359 124 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 OMPP47874 163 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms