RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 POLR2HP52434 150 aaKnown RBP13.22□□□□□ -0.29
SS18-212ENST00000579061 TESK1Q15569 626 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 FBXW10Q5XX13 1052 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 ZNF836Q6ZNA1 936 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 ZNF550Q7Z398 422 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 VRK2Q86Y07 508 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 TUSC5Q8IXB3 177 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 BBS10Q8TAM1 723 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 SLC35B4Q969S0 331 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 PSD2Q9BQI7 771 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 MED18Q9BUE0 208 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 SPATA9Q9BWV2 254 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 ADAM19Q9H013 955 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 NPHS2Q9NP85 383 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 MRGBPQ9NV56 204 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 ZNF446Q9NWS9 450 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 VAPAQ9P0L0 249 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 SLAMF8Q9P0V8 285 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 ST6GALNAC2Q9UJ37 374 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 DCTN4Q9UJW0 460 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 OSGIN1Q9UJX0 560 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 TRAPPC4Q9Y296 219 aa13.22□□□□□ -0.29
SS18-212ENST00000579061 ZNF443Q9Y2A4 671 aaPredicted RBP13.22□□□□□ -0.29
SS18-212ENST00000579061 TMED7-TICAM2A0A0A6YYA0 188 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 ZNF724A8MTY0 619 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 EVPLLA8MZ36 301 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 SMAD9O15198 467 aaKnown RBP13.21□□□□□ -0.29
SS18-212ENST00000579061 NUDT7P0C024 238 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 ARAFP10398 606 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 TFPIP10646 304 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 GPX2P18283 190 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 PSMB1P20618 241 aaKnown RBP13.21□□□□□ -0.29
SS18-212ENST00000579061 CRYGSP22914 178 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 ACAA2P42765 397 aaKnown RBP13.21□□□□□ -0.29
SS18-212ENST00000579061 RASGEF1BQ0VAM2 473 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 PDK3Q15120 406 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 EXOC3L2Q2M3D2 409 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 RPS26P11Q5JNZ5 115 aaPredicted RBP13.21□□□□□ -0.29
SS18-212ENST00000579061 TFAP2EQ6VUC0 442 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 STAC2Q6ZMT1 411 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 MTDHQ86UE4 582 aaKnown RBP13.21□□□□□ -0.29
SS18-212ENST00000579061 DPP10Q8N608 796 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 DDIT4LQ96D03 193 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 ZHX1-C8orf76Q96EF9 292 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 THOC1Q96FV9 657 aaKnown RBP13.21□□□□□ -0.29
SS18-212ENST00000579061 KLHL4Q9C0H6 718 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 TMEM38AQ9H6F2 299 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 RLIMQ9NVW2 624 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 LEF1Q9UJU2 399 aaPredicted RBP13.21□□□□□ -0.29
SS18-212ENST00000579061 ING1Q9UK53 422 aaPredicted RBP13.21□□□□□ -0.29
SS18-212ENST00000579061 ITGB1BP2Q9UKP3 347 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 GPR52Q9Y2T5 361 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 TMED7Q9Y3B3 224 aa13.21□□□□□ -0.29
SS18-212ENST00000579061 IGHV3-15A0A0B4J1V0 119 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 A0A0G2JND7 137 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 C5orf58C9J3I9 102 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 PGM3O95394 542 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 FESP07332 822 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 TROVE2P10155 538 aaKnown RBP eCLIP13.2□□□□□ -0.3
SS18-212ENST00000579061 TACR3P29371 465 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 GCNT6Q5T4J0 391 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 ABLIM2Q6H8Q1 611 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 WBP2NLQ6ICG8 309 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 DLEU7Q6UYE1 221 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 SPNS3Q6ZMD2 512 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 NUFIP2Q7Z417 695 aaKnown RBP13.2□□□□□ -0.3
SS18-212ENST00000579061 NRGNQ92686 78 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 ARL5BQ96KC2 179 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 HDHD5Q9BXW7 423 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 C12orf49Q9H741 205 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 PLEKHF2Q9H8W4 249 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 KLHL28Q9NXS3 571 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 TMEM181Q9P2C4 612 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 NDUFAF1Q9Y375 327 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 CHST2Q9Y4C5 530 aa13.2□□□□□ -0.3
SS18-212ENST00000579061 CELSR1Q9NYQ6 3014 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 F8P00451 2351 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 IGKV3D-15A0A087WSY6 115 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 TMEM72A0PK05 275 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 DEFB108AA8MXU0 73 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 EIF1BO60739 113 aaKnown RBP13.19□□□□□ -0.3
SS18-212ENST00000579061 GCM2O75603 506 aaPredicted RBP13.19□□□□□ -0.3
SS18-212ENST00000579061 CNOT4O95628 575 aaKnown RBP13.19□□□□□ -0.3
SS18-212ENST00000579061 GKN3PP0CG01 181 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 CD1EP15812 388 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 DNASE1P24855 282 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 OR3A2P47893 321 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 IST1P53990 364 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 COPZ1P61923 177 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 HSP90B2PQ58FF3 399 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 RUNDC3AQ59EK9 446 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 ZNF311Q5JNZ3 666 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 REEP3Q6NUK4 255 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 GABRG1Q8N1C3 465 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 CLIP4Q8N3C7 705 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 PIGXQ8TBF5 258 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 MAL2Q969L2 176 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 USB1Q9BQ65 265 aaKnown RBP13.19□□□□□ -0.3
SS18-212ENST00000579061 SPATA5L1Q9BVQ7 753 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 POTEKPQ9BYX7 375 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms