RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 RTL6Q6ICC9 239 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 LRRC8BQ6P9F7 803 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 TRAT1Q6PIZ9 186 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 PIWIL3Q7Z3Z3 882 aaKnown RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 VPS36Q86VN1 386 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 ECHDC2Q86YB7 292 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 TMEM126BQ8IUX1 230 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 GRAMD2AQ8IUY3 354 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 RIBC1Q8N443 379 aaPredicted RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 KIF2BQ8N4N8 673 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 MINDY2Q8NBR6 621 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 ANGPTL6Q8NI99 470 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 TAF4BQ92750 862 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 BORCS5Q969J3 196 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 TMA16Q96EY4 203 aaKnown RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 TCEANC2Q96MN5 208 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 SERPINB12Q96P63 405 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 CPXM1Q96SM3 734 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 MRPS26Q9BYN8 205 aaKnown RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 RPAP3Q9H6T3 665 aaPredicted RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 C12orf10Q9HB07 376 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 EXOSC3Q9NQT5 275 aaKnown RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 ABCB8Q9NUT2 735 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 FKBP14Q9NWM8 211 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 GID8Q9NWU2 228 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 C6orf203Q9P0P8 240 aaPredicted RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 STX8Q9UNK0 236 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 KCNK6Q9Y257 313 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 IFT52Q9Y366 437 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 UTP11Q9Y3A2 253 aaKnown RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 HEY1Q9Y5J3 304 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 MAP3K19Q56UN5 1328 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 NRKQ7Z2Y5 1582 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 CPDO75976 1380 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 LOC105371267A0A1B0GV96 52 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 MACROD2A1Z1Q3 448 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ZNF320A2RRD8 509 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 GOLGA8MH3BSY2 632 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 BOLA2-SMG1P6H3BVE0 249 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 PGRMC1O00264 195 aaKnown RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 CPLX1O14810 134 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 RASGRF2O14827 1237 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 CASQ2O14958 399 aaPredicted RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ENTPD5O75356 428 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 TXNDC12O95881 172 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 IL1BP01584 269 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 APOEP02649 317 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 HMOX1P09601 288 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 UBTFL6P0CB48 400 aaPredicted RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ZCCHC18P0CG32 403 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 C8orf89P0DMQ9 161 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 STMN1P16949 149 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 TAC1P20366 129 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 EPS15P42566 896 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 IFNAR2P48551 515 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 GSSP48637 474 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 CDK9P50750 372 aaKnown RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 IL9RQ01113 521 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 DR1Q01658 176 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 KLRC3Q07444 240 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 DAZ2Q13117 558 aaKnown RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 DNAJC3Q13217 504 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 PDE7AQ13946 482 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 PTGES3Q15185 160 aaKnown RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 RPS6KA1Q15418 735 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 TRMT5Q32P41 509 aaKnown RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ZNF829Q3KNS6 432 aaPredicted RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ANKDD1AQ495B1 522 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 FUT11Q495W5 492 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ANKRD20A4Q4UJ75 823 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 HSP90AA4PQ58FG1 418 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ACSBG2Q5FVE4 666 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 EOGTQ5NDL2 527 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 TWF2Q6IBS0 349 aaKnown RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ASPHD2Q6ICH7 369 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 SPOPLQ6IQ16 392 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 IYDQ6PHW0 289 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 UGT2A3Q6UWM9 527 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 FRA10AC1Q70Z53 315 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 TRMT10CQ7L0Y3 403 aaKnown RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ZNF410Q86VK4 478 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 MMAAQ8IVH4 418 aaKnown RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ATP6V0D2Q8N8Y2 350 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ATAD1Q8NBU5 361 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 OR7G1Q8NGA0 311 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 GIPC3Q8TF64 312 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 RASSF5Q8WWW0 418 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 STMN2Q93045 179 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 EPSTI1Q96J88 318 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ZNF641Q96N77 438 aaPredicted RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 FMO2Q99518 471 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 NRTNQ99748 197 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 SELENOSQ9BQE4 189 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ERP44Q9BS26 406 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 MLPHQ9BV36 600 aaPredicted RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 SPZ1Q9BXG8 430 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 C1orf21Q9H246 121 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 NEUROG2Q9H2A3 272 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 Q9H521 79 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 AZI2Q9H6S1 392 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms