RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TMEM81Q6P7N7 255 aa11.4□□□□□ -0.58
LDLR-205ENST00000557933 RELL2Q8NC24 303 aaPredicted RBP11.4□□□□□ -0.58
LDLR-205ENST00000557933 OR5T3Q8NGG3 340 aa11.4□□□□□ -0.58
LDLR-205ENST00000557933 OR52E1Q8NGJ3 308 aa11.4□□□□□ -0.58
LDLR-205ENST00000557933 BPIFA2Q96DR5 249 aa11.4□□□□□ -0.58
LDLR-205ENST00000557933 DMRTA2Q96SC8 542 aa11.4□□□□□ -0.58
LDLR-205ENST00000557933 PRSS27Q9BQR3 290 aa11.4□□□□□ -0.58
LDLR-205ENST00000557933 ZNF436Q9C0F3 470 aaPredicted RBP11.4□□□□□ -0.58
LDLR-205ENST00000557933 FXYD6Q9H0Q3 95 aa11.4□□□□□ -0.58
LDLR-205ENST00000557933 ERVMER34-1Q9H9K5 563 aa11.4□□□□□ -0.58
LDLR-205ENST00000557933 MEPEQ9NQ76 525 aaPredicted RBP11.4□□□□□ -0.58
LDLR-205ENST00000557933 PRDM9Q9NQV7 894 aa11.4□□□□□ -0.58
LDLR-205ENST00000557933 ASB6Q9NWX5 421 aa11.4□□□□□ -0.58
LDLR-205ENST00000557933 MYEF2Q9P2K5 600 aaKnown RBP11.4□□□□□ -0.58
LDLR-205ENST00000557933 EXOGQ9Y2C4 368 aaKnown RBP11.4□□□□□ -0.58
LDLR-205ENST00000557933 ZNF780BQ9Y6R6 833 aa11.4□□□□□ -0.58
LDLR-205ENST00000557933 MPDZO75970 2070 aa11.4□□□□□ -0.59
LDLR-205ENST00000557933 TBC1D3BA6NDS4 549 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 GRXCR1A8MXD5 290 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 EMC8O43402 210 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 CDC123O75794 336 aaPredicted RBP11.39□□□□□ -0.59
LDLR-205ENST00000557933 SBK2P0C263 348 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 EPXP11678 715 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 FNTBP49356 437 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 ANXA11P50995 505 aaKnown RBP11.39□□□□□ -0.59
LDLR-205ENST00000557933 ZNF136P52737 540 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 OR1Q1Q15612 314 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 ZNF613Q6PF04 617 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 SRFBP1Q8NEF9 429 aaKnown RBP11.39□□□□□ -0.59
LDLR-205ENST00000557933 OR5M1Q8NGP8 315 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 TMEM239Q8WW34 195 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 RBPMSQ93062 196 aaKnown RBP11.39□□□□□ -0.59
LDLR-205ENST00000557933 FBXW5Q969U6 566 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 ADGRL4Q9HBW9 690 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 BCL2L10Q9HD36 194 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 NOX4Q9NPH5 578 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 PLXNA2O75051 1894 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 TRBV2A0A0J9YWF9 115 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 LINC00862A6NCI5 91 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 EML2O95834 649 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 PLATP00750 562 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 RLN1P04808 185 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 LIPCP11150 499 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 APEHP13798 732 aaKnown RBP11.39□□□□□ -0.59
LDLR-205ENST00000557933 EDNRAP25101 427 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 AK4P27144 223 aaPredicted RBP11.39□□□□□ -0.59
LDLR-205ENST00000557933 STAT5AP42229 794 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 GDI2P50395 445 aaKnown RBP11.39□□□□□ -0.59
LDLR-205ENST00000557933 GNA13Q14344 377 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 TMEM31Q5JXX7 168 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 SLC48A1Q6P1K1 146 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 C17orf107Q6ZR85 190 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 SFTPA2Q8IWL1 248 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 HS6ST2Q96MM7 605 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 ERMAPQ96PL5 475 aaPredicted RBP11.39□□□□□ -0.59
LDLR-205ENST00000557933 ARHGDIGQ99819 225 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 WDR26Q9H7D7 661 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 NT5DC2Q9H857 520 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 RPS6KB2Q9UBS0 482 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 ING1Q9UK53 422 aaPredicted RBP11.39□□□□□ -0.59
LDLR-205ENST00000557933 FBXL2Q9UKC9 423 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 NUBP2Q9Y5Y2 271 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 GXYLT2A0PJZ3 443 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 BHLHE40O14503 412 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 CASC3O15234 703 aaKnown RBP11.39□□□□□ -0.59
LDLR-205ENST00000557933 FLRT2O43155 660 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 SPDEFO95238 335 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 IFNA7P01567 189 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 ADH5P11766 374 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 LAMP2P13473 410 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 F8A1P23610 371 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 BTG1P62324 171 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 ZNF234Q14588 700 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 OPCMLQ14982 345 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 LINC00303Q3SY05 128 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 FAM74A1Q5RGS3 127 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 C7orf61Q8IZ16 206 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 FRMD1Q8N878 549 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 OR8S1Q8NH09 359 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 OR10G6Q8NH81 332 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 SNX33Q8WV41 574 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 CNOT9Q92600 299 aaKnown RBP11.39□□□□□ -0.59
LDLR-205ENST00000557933 GIMAP5Q96F15 307 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 CAMK1GQ96NX5 476 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 MNTQ99583 582 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 B3GNT4Q9C0J1 378 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 EMC7Q9NPA0 242 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 ZC4H2Q9NQZ6 224 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 MARK1Q9P0L2 795 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 MRPS2Q9Y399 296 aaKnown RBP11.39□□□□□ -0.59
LDLR-205ENST00000557933 PCDHGA5Q9Y5G8 931 aa11.39□□□□□ -0.59
LDLR-205ENST00000557933 FREM2Q5SZK8 3169 aa11.38□□□□□ -0.59
LDLR-205ENST00000557933 IRGMA1A4Y4 181 aa11.38□□□□□ -0.59
LDLR-205ENST00000557933 NGFRP08138 427 aa11.38□□□□□ -0.59
LDLR-205ENST00000557933 NUDT1P36639 197 aa11.38□□□□□ -0.59
LDLR-205ENST00000557933 METRNLQ641Q3 311 aa11.38□□□□□ -0.59
LDLR-205ENST00000557933 ATRAIDQ6UW56 229 aa11.38□□□□□ -0.59
LDLR-205ENST00000557933 MTSS1LQ765P7 747 aa11.38□□□□□ -0.59
LDLR-205ENST00000557933 MRGPREQ86SM8 312 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms