RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 TMEM44Q2T9K0 475 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 ALG11Q2TAA5 492 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 HSD17B12Q53GQ0 312 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 KIF18BQ86Y91 864 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 FAM26EQ8N5C1 309 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 NAXEQ8NCW5 288 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 PHOSPHO2Q8TCD6 241 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 C19orf43Q9BQ61 176 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 CACNG6Q9BXT2 260 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 LHX9Q9NQ69 397 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 ARHGEF17Q96PE2 2063 aaPredicted RBP13.76□□□□□ -0.21
CUX1-215ENST00000556210 FMO6PO60774 539 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 TRAPPC2P0DI81 140 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 TRAPPC2BP0DI82 140 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 APEHP13798 732 aaKnown RBP13.75□□□□□ -0.21
CUX1-215ENST00000556210 RFX2P48378 723 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 NR0B1P51843 470 aaKnown RBP13.75□□□□□ -0.21
CUX1-215ENST00000556210 ELOAQ14241 798 aaKnown RBP13.75□□□□□ -0.21
CUX1-215ENST00000556210 SF3A2Q15428 464 aaKnown RBP13.75□□□□□ -0.21
CUX1-215ENST00000556210 LYPD8Q6UX82 237 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 MBOAT2Q6ZWT7 520 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 MEPCEQ7L2J0 689 aaKnown RBP13.75□□□□□ -0.21
CUX1-215ENST00000556210 METTL21AQ8WXB1 218 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.75□□□□□ -0.21
CUX1-215ENST00000556210 LRIT1Q9P2V4 623 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 LAMP5Q9UJQ1 280 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 PATJQ8NI35 1801 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 EP300Q09472 2414 aaPredicted RBP13.75□□□□□ -0.21
CUX1-215ENST00000556210 CDHR4A6H8M9 788 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 RNF13O43567 381 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 SPARCP09486 303 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 MNDAP41218 407 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 DUSP6Q16828 381 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 VN1R4Q7Z5H5 301 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 MOSPD2Q8NHP6 518 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 ZFAND1Q8TCF1 268 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 RASD2Q96D21 266 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 BARHL1Q9BZE3 327 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 B3GNT4Q9C0J1 378 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 SYNPO2LQ9H987 977 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 REV1Q9UBZ9 1251 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 C17orf105B2RV13 164 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 RFPL3O75679 317 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 MNX1P50219 401 aaPredicted RBP13.75□□□□□ -0.21
CUX1-215ENST00000556210 SNTB2Q13425 540 aaKnown RBP13.75□□□□□ -0.21
CUX1-215ENST00000556210 TAF13Q15543 124 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 RNF165Q6ZSG1 346 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 ZNF627Q7L945 461 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 COX14Q96I36 57 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 SEC61A2Q9H9S3 476 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 TRAPPC4Q9Y296 219 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 DOCK9Q9BZ29 2069 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 ABCA7Q8IZY2 2146 aa13.75□□□□□ -0.21
CUX1-215ENST00000556210 CNOT1A5YKK6 2376 aaKnown RBP13.75□□□□□ -0.21
CUX1-215ENST00000556210 SCO1O75880 301 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 OR8G3PP0DMU2 310 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 AQP2P41181 271 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 FCN2Q15485 313 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 C1orf94Q6P1W5 598 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 LYPD4Q6UWN0 246 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 SIRT6Q8N6T7 355 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 TP53I13Q8NBR0 393 aaPredicted RBP13.74□□□□□ -0.21
CUX1-215ENST00000556210 DNAJA4Q8WW22 397 aaPredicted RBP13.74□□□□□ -0.21
CUX1-215ENST00000556210 THAP4Q8WY91 577 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 VWCEQ96DN2 955 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 THAP7Q9BT49 309 aaPredicted RBP13.74□□□□□ -0.21
CUX1-215ENST00000556210 TAPBPLQ9BX59 468 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 OR10A4Q9H209 315 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 TTYH1Q9H313 450 aaPredicted RBP13.74□□□□□ -0.21
CUX1-215ENST00000556210 ING1Q9UK53 422 aaPredicted RBP13.74□□□□□ -0.21
CUX1-215ENST00000556210 TEX13CA0A0J9YWL9 993 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 SEMA7AO75326 666 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 APBB3O95704 486 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 GIFP27352 417 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 CAMK2BQ13554 666 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 EFR3AQ14156 821 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 SLC35D2Q76EJ3 337 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 LRRC56Q8IYG6 542 aaPredicted RBP13.74□□□□□ -0.21
CUX1-215ENST00000556210 RANBP3Q9H6Z4 567 aaPredicted RBP13.74□□□□□ -0.21
CUX1-215ENST00000556210 KLHL21Q9UJP4 597 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 ARL6IP5O75915 188 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 MT-ND4P03905 459 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 PROS1P07225 676 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 CSNK1EP49674 416 aaKnown RBP13.74□□□□□ -0.21
CUX1-215ENST00000556210 TMED4Q7Z7H5 227 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 JAGN1Q8N5M9 183 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 TNFAIP8L1Q8WVP5 186 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 OR14A2Q96R54 314 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 CCDC86Q9H6F5 360 aaKnown RBP13.74□□□□□ -0.21
CUX1-215ENST00000556210 NDUFB11Q9NX14 153 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 NFKBIL1Q9UBC1 381 aaPredicted RBP13.74□□□□□ -0.21
CUX1-215ENST00000556210 COPS7AQ9UBW8 275 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 TMEM5Q9Y2B1 443 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 A0A0J9YY10 115 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 DVL2O14641 736 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 SLC19A2O60779 497 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 LALBAP00709 142 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 GABRA5P31644 462 aa13.74□□□□□ -0.21
CUX1-215ENST00000556210 CRYBB2P43320 205 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms