RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 A0A1W2PNR3 127 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 MSTNO14793 375 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 ZNF208O43345 1280 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 SYNGR4O95473 234 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 ENPP1P22413 925 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 POLR2HP52434 150 aaKnown RBP11.59□□□□□ -0.55
VPS28-216ENST00000533806 CRYBA2P53672 197 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 DMTNQ08495 405 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 GLIPR1L2Q4G1C9 344 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 ZNF550Q7Z398 422 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 LSRQ86X29 649 aaPredicted RBP11.59□□□□□ -0.55
VPS28-216ENST00000533806 KRT73Q86Y46 540 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 MCEMP1Q8IX19 187 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 ROBO4Q8WZ75 1007 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 C14orf79Q96F83 325 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 ZNF583Q96ND8 569 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 OR5B2Q96R09 309 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 ZNF607Q96SK3 696 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 SH3GL1Q99961 368 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 WFDC6Q9BQY6 131 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 SPATA5L1Q9BVQ7 753 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 ARMC7Q9H6L4 198 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 GP6Q9HCN6 339 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 TIGARQ9NQ88 270 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 PLSCR4Q9NRQ2 329 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 TMED7Q9Y3B3 224 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 INTS1Q8N201 2190 aaKnown RBP11.59□□□□□ -0.55
VPS28-216ENST00000533806 MED12LQ86YW9 2145 aa11.59□□□□□ -0.55
VPS28-216ENST00000533806 PRORSD1PA6NEY8 169 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 EEF1E1-BLOC1S5C9J1V9 151 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 SMAD9O15198 467 aaKnown RBP11.58□□□□□ -0.56
VPS28-216ENST00000533806 EEF1E1O43324 174 aaKnown RBP11.58□□□□□ -0.56
VPS28-216ENST00000533806 FRS3O43559 492 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 TPST2O60704 377 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 NPIPB7O75200 414 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 COX4I1P13073 169 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 KLK2P20151 261 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 SLC7A1P30825 629 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 PCGF2P35227 344 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 DIO1P49895 249 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 GNGT1P63211 74 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 H3F3AP84243 136 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 SORDQ00796 357 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 MYBPHQ13203 477 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 CYP51A1Q16850 503 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 VMACQ2NL98 169 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 MMEL1Q495T6 779 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 WBP2NLQ6ICG8 309 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 ZNF474Q6S9Z5 364 aaPredicted RBP11.58□□□□□ -0.56
VPS28-216ENST00000533806 CCDC80Q76M96 950 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 FCRLAQ7L513 359 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 ATG4DQ86TL0 474 aaPredicted RBP11.58□□□□□ -0.56
VPS28-216ENST00000533806 SLC30A8Q8IWU4 369 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 POU5F2Q8N7G0 328 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 LSMEM1Q8N8F7 131 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 PCYOX1LQ8NBM8 494 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 GPR32P1Q8NGA4 272 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 ABHD3Q8WU67 409 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 C3orf49Q96BT1 292 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 RCN3Q96D15 328 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 PRRG4Q9BZD6 226 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 OR11A1Q9GZK7 315 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 GID8Q9NWU2 228 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 KCNN3Q9UGI6 736 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 TRAPPC4Q9Y296 219 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 HDGFL3Q9Y3E1 203 aa11.58□□□□□ -0.56
VPS28-216ENST00000533806 SPIN1Q9Y657 262 aaPredicted RBP11.58□□□□□ -0.56
VPS28-216ENST00000533806 TMEM72A0PK05 275 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 ZC3H12DA2A288 527 aaKnown RBP11.57□□□□□ -0.56
VPS28-216ENST00000533806 TMEM229AB2RXF0 380 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 M0QX08 132 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 DNPH1O43598 174 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 CYTIPO60759 359 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 SERPINB7O75635 380 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 PRKD3O94806 890 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 PMS2P2O95744 297 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 C8BP07358 591 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 UQCRBP14927 111 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 HTR2AP28223 471 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 AQP1P29972 269 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 UQCRC1P31930 480 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 PEX19P40855 299 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 KCNJ5P48544 419 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 SIRPAP78324 504 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 HOXC5Q00444 222 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 RNPS1Q15287 305 aaKnown RBP11.57□□□□□ -0.56
VPS28-216ENST00000533806 DUSP7Q16829 419 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 GTF2IRD2BQ6EKJ0 949 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 C6orf89Q6UWU4 347 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 CPLX4Q7Z7G2 160 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 LUZP2Q86TE4 346 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 GTF2IRD2Q86UP8 949 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 ARMC8Q8IUR7 673 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 SLC43A2Q8N370 569 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 CNEP1R1Q8N9A8 125 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 ZNF610Q8N9Z0 462 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 BHLHE22Q8NFJ8 381 aaPredicted RBP11.57□□□□□ -0.56
VPS28-216ENST00000533806 OR6K3Q8NGY3 331 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 PSD2Q9BQI7 771 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 RBM24Q9BX46 236 aaKnown RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms