RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 GATAD1Q8WUU5 269 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 KIFAP3Q92845 792 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 TMEM186Q96B77 213 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 TBC1D31Q96DN5 1066 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 TMA16Q96EY4 203 aaKnown RBP3.16□□□□□ -1.9
CD44-235ENST00000532339 PITPNM3Q9BZ71 974 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 FBXO44Q9H4M3 255 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 ASB7Q9H672 318 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 PIGVQ9NUD9 493 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 GDAP2Q9NXN4 497 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 HACD3Q9P035 362 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 EPHA6Q9UF33 1036 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 DNPEPQ9ULA0 475 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 SH3GLB1Q9Y371 365 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 PIKFYVEQ9Y2I7 2098 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 TENM2Q9NT68 2774 aa3.15□□□□□ -1.9
CD44-235ENST00000532339 A0A087WZ39 114 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 CCDC169A6NNP5 214 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 TMEM110-MUSTN1A8MSY1 372 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 PIN1P1O15428 100 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 SYT7O43581 403 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 TCF21O43680 179 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 SLC37A4O43826 429 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 GAS8O95995 478 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 TNFP01375 233 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 B4GALT1P15291 398 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 ZNF18P17022 549 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 LMO2P25791 158 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 CAMLGP49069 296 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 HNRNPFP52597 415 aaKnown RBP3.15□□□□□ -1.91
CD44-235ENST00000532339 CSNK2BP67870 215 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 CEACAM7Q14002 265 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 GAMTQ14353 236 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 DUSP5Q16690 384 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 C6orf52Q5T4I8 152 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 AGAP7PQ5VUJ5 663 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 ZCCHC12Q6PEW1 402 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 DOLPP1Q86YN1 238 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 LACC1Q8IV20 430 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 RAB42Q8N4Z0 105 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 LRRC52Q8N7C0 313 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 CCNYQ8ND76 341 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 TRPV3Q8NET8 790 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 ANKRD20A12PQ8NF67 263 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 OR5AP2Q8NGF4 316 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 OR10G6Q8NH81 332 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 WFDC5Q8TCV5 224 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 BPIFA2Q96DR5 249 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 AGAP4Q96P64 663 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 FAM111AQ96PZ2 611 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 ZNF300Q96RE9 604 aaPredicted RBP3.15□□□□□ -1.91
CD44-235ENST00000532339 TDRD1Q9BXT4 1180 aaKnown RBP3.15□□□□□ -1.91
CD44-235ENST00000532339 DPEP3Q9H4B8 488 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 DYRK4Q9NR20 520 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 HPF1Q9NWY4 346 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 HOOK1Q9UJC3 728 aaKnown RBP3.15□□□□□ -1.91
CD44-235ENST00000532339 STOML2Q9UJZ1 356 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 RNF6Q9Y252 685 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 ETV7Q9Y603 341 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 TRPM6Q9BX84 2022 aa3.15□□□□□ -1.91
CD44-235ENST00000532339 A0A087WWV3 80 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 TRAV17A0A0B4J275 112 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 ATP6AP2A0A1C7CYW4 349 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 MACROD2A1Z1Q3 448 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 TMEM89A2RUT3 159 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 RBMY1BA6NDE4 496 aaKnown RBP3.14□□□□□ -1.91
CD44-235ENST00000532339 RBMY1EA6NEQ0 496 aaKnown RBP3.14□□□□□ -1.91
CD44-235ENST00000532339 KPNA3O00505 521 aaPredicted RBP3.14□□□□□ -1.91
CD44-235ENST00000532339 OGTO15294 1046 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 FAM189A1O60320 539 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 TSPAN12O95859 305 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 TGFAP01135 160 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 FGF1P05230 155 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 RBMY1DP0C7P1 496 aaKnown RBP3.14□□□□□ -1.91
CD44-235ENST00000532339 ETS1P14921 441 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 ANPEPP15144 967 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 FERP16591 822 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 RPL35AP18077 110 aaKnown RBP3.14□□□□□ -1.91
CD44-235ENST00000532339 ACKR3P25106 362 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 RPA1P27694 616 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 SHC1P29353 583 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 SLC1A3P43003 542 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 PITPNBP48739 271 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 PEX3P56589 373 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 GUCY2DQ02846 1103 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 PPP1R8Q12972 351 aaKnown RBP3.14□□□□□ -1.91
CD44-235ENST00000532339 CAPRIN1Q14444 709 aaKnown RBP3.14□□□□□ -1.91
CD44-235ENST00000532339 SPHARQ15513 63 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 STX1AQ16623 288 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 LRRC37A5PQ49AS3 106 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 FASTKD1Q53R41 847 aaKnown RBP3.14□□□□□ -1.91
CD44-235ENST00000532339 FGD3Q5JSP0 725 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 BSPRYQ5W0U4 402 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 CYP4V2Q6ZWL3 525 aaPredicted RBP3.14□□□□□ -1.91
CD44-235ENST00000532339 KDM8Q8N371 416 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 TCEANCQ8N8B7 351 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 NIPA2Q8N8Q9 360 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 CATSPER1Q8NEC5 780 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 OR10G8Q8NGN5 311 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 GLYATL1Q969I3 302 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms