RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CXCR1P25024 350 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 CLDN8P56748 225 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 TAS2R30P59541 319 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 CSNK2A1P68400 391 aaPredicted RBP12.46□□□□□ -0.41
USP40-208ENST00000450966 GPR50Q13585 617 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 EBPQ15125 230 aaKnown RBP12.46□□□□□ -0.41
USP40-208ENST00000450966 NKPD1Q17RQ9 610 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 PAGE3Q5JUK9 113 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 FCRLBQ6BAA4 426 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 DLK2Q6UY11 383 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 CSNK2A3Q8NEV1 391 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 FAM213BQ8TBF2 198 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 YIPF6Q96EC8 236 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 PARPBPQ9NWS1 579 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 A0A1B0GVT2 93 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 I6L893 689 aaPredicted RBP12.46□□□□□ -0.41
USP40-208ENST00000450966 CYB5BO43169 146 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 TMEM127O75204 238 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 RPS24P62847 133 aaKnown RBP12.46□□□□□ -0.41
USP40-208ENST00000450966 PRAMEF14Q5SWL7 426 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 KCTD18Q6PI47 426 aaPredicted RBP12.46□□□□□ -0.41
USP40-208ENST00000450966 ZNF383Q8NA42 475 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 OR4M1Q8NGD0 313 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 OR52E4Q8NGH9 312 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 ZNF417Q8TAU3 575 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 C16orf78Q8WTQ4 265 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 LINC00052Q96N35 136 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 ZNF587Q96SQ5 575 aaPredicted RBP12.46□□□□□ -0.41
USP40-208ENST00000450966 XYLT2Q9H1B5 865 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 UBE2J1Q9Y385 318 aaPredicted RBP12.46□□□□□ -0.41
USP40-208ENST00000450966 NUP188Q5SRE5 1749 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 PRICKLE3O43900 615 aaPredicted RBP12.46□□□□□ -0.41
USP40-208ENST00000450966 C6orf47O95873 294 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 HLA-HP01893 362 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 TMEM183BQ1AE95 376 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 PHYHD1Q5SRE7 291 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 CST9LP1Q5W188 147 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 PIM3Q86V86 326 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 OR56A1Q8NGH5 318 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 OR5M3Q8NGP4 307 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 LMX1AQ8TE12 382 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 ZNF566Q969W8 418 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 ZDHHC11Q9H8X9 412 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 B3GAT2Q9NPZ5 323 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 NHSL1Q5SYE7 1610 aa12.46□□□□□ -0.42
USP40-208ENST00000450966 DNAJC25-GNG10A0A024R161 153 aa12.46□□□□□ -0.42
USP40-208ENST00000450966 HEPACAM2A8MVW5 462 aa12.46□□□□□ -0.42
USP40-208ENST00000450966 OR2B11Q5JQS5 317 aa12.46□□□□□ -0.42
USP40-208ENST00000450966 ERN2Q76MJ5 926 aaKnown RBP12.46□□□□□ -0.42
USP40-208ENST00000450966 DPF1Q92782 380 aa12.46□□□□□ -0.42
USP40-208ENST00000450966 HRASLS5Q96KN8 279 aa12.46□□□□□ -0.42
USP40-208ENST00000450966 NUDT16L1Q9BRJ7 211 aaKnown RBP12.46□□□□□ -0.42
USP40-208ENST00000450966 RNF39Q9H2S5 420 aa12.46□□□□□ -0.42
USP40-208ENST00000450966 MAS1P04201 325 aa12.46□□□□□ -0.42
USP40-208ENST00000450966 SLC35A2P78381 396 aa12.46□□□□□ -0.42
USP40-208ENST00000450966 LRRC56Q8IYG6 542 aaPredicted RBP12.46□□□□□ -0.42
USP40-208ENST00000450966 BPIFCQ8NFQ6 507 aa12.46□□□□□ -0.42
USP40-208ENST00000450966 GPR119Q8TDV5 335 aa12.46□□□□□ -0.42
USP40-208ENST00000450966 RASD2Q96D21 266 aa12.46□□□□□ -0.42
USP40-208ENST00000450966 V9GY05 133 aa12.46□□□□□ -0.42
USP40-208ENST00000450966 OR13C7P0DN81 318 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 CD1DP15813 335 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 CXADRP78310 365 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 AQP6Q13520 282 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 RUNX3Q13761 415 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 ENPP2Q13822 863 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 SLBPQ14493 270 aaKnown RBP eCLIP12.45□□□□□ -0.42
USP40-208ENST00000450966 C3orf38Q5JPI3 329 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 LY6G5CQ5SRR4 150 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 OR52W1Q6IF63 320 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 ZNF701Q9NV72 531 aaPredicted RBP12.45□□□□□ -0.42
USP40-208ENST00000450966 BET1LQ9NYM9 111 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 GDF2Q9UK05 429 aaPredicted RBP12.45□□□□□ -0.42
USP40-208ENST00000450966 DCTN6O00399 190 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 ACP2P11117 423 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 ZNF8P17098 575 aaPredicted RBP12.45□□□□□ -0.42
USP40-208ENST00000450966 LRRC73Q5JTD7 316 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 EPHA6Q9UF33 1036 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 LAMB4A4D0S4 1761 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 TCRBV21S2A2A0A5A6 115 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 SELENOWP63302 87 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 TLE1Q04724 770 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 ZNF124Q15973 351 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 MTURNQ8N3F0 131 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 ZNF300Q96RE9 604 aaPredicted RBP12.45□□□□□ -0.42
USP40-208ENST00000450966 MCHR1Q99705 422 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 NUDT9Q9BW91 350 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 CD244Q9BZW8 370 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 ZNF385DQ9H6B1 395 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 PTGES2Q9H7Z7 377 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 ALS2Q96Q42 1657 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 SNRPGP15A8MWD9 76 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 M0R2N6 131 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 TCF21O43680 179 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 GPR32O75388 356 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 HBQ1P09105 142 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 NTSR1P30989 418 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 GATMP50440 423 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 TOMM34Q15785 309 aaPredicted RBP12.45□□□□□ -0.42
USP40-208ENST00000450966 RPE65Q16518 533 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms