RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 PAGE3Q5JUK9 113 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 GCNT6Q5T4J0 391 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 PRAMEF8Q5VWM4 474 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 PRAMEF7Q5VXH5 474 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 METTL21CQ5VZV1 264 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 ANKRD34AQ69YU3 496 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 ZNF836Q6ZNA1 936 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 ZNF550Q7Z398 422 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 ADGRG3Q86Y34 549 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 CADM2Q8N3J6 435 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 BBS10Q8TAM1 723 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 MAL2Q969L2 176 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 ZC3HAV1LQ96H79 300 aaKnown RBP9.99□□□□□ -0.81
RFFL-204ENST00000414419 SPATA9Q9BWV2 254 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 A4GALTQ9NPC4 353 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 RLIMQ9NVW2 624 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 SLC25A37Q9NYZ2 338 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 LEF1Q9UJU2 399 aaPredicted RBP9.99□□□□□ -0.81
RFFL-204ENST00000414419 ZNF443Q9Y2A4 671 aaPredicted RBP9.99□□□□□ -0.81
RFFL-204ENST00000414419 NDUFAF1Q9Y375 327 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 TMED7Q9Y3B3 224 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 DSPPQ9NZW4 1301 aa9.99□□□□□ -0.81
RFFL-204ENST00000414419 SMAD9O15198 467 aaKnown RBP9.98□□□□□ -0.81
RFFL-204ENST00000414419 ZNF208O43345 1280 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 CYTIPO60759 359 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 ADAM11O75078 769 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 PMS2P2O95744 297 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 FESP07332 822 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 VIMP08670 466 aaKnown RBP9.98□□□□□ -0.81
RFFL-204ENST00000414419 GKN3PP0CG01 181 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 BMP2P12643 396 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 OR2B6P58173 313 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 RNF220Q5VTB9 566 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 WBP2NLQ6ICG8 309 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 NUFIP2Q7Z417 695 aaKnown RBP9.98□□□□□ -0.81
RFFL-204ENST00000414419 MTDHQ86UE4 582 aaKnown RBP9.98□□□□□ -0.81
RFFL-204ENST00000414419 KRT73Q86Y46 540 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 NINJ1Q92982 152 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 DNAJA3Q96EY1 480 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 PSD2Q9BQI7 771 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 SPATA5L1Q9BVQ7 753 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 HDHD5Q9BXW7 423 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 BCO1Q9HAY6 547 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 BCL2L10Q9HD36 194 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 SLC52A3Q9NQ40 469 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 MRGBPQ9NV56 204 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 EMC3Q9P0I2 261 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 VAPAQ9P0L0 249 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 SLAMF8Q9P0V8 285 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 TMEM181Q9P2C4 612 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 ST6GALNAC2Q9UJ37 374 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 OSGIN1Q9UJX0 560 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 GPR52Q9Y2T5 361 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 CSMD2Q7Z408 3487 aa9.98□□□□□ -0.81
RFFL-204ENST00000414419 TMEM72A0PK05 275 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 ZNF724A8MTY0 619 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 DNPH1O43598 174 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 PGM3O95394 542 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 HRGP04196 525 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 ARAFP10398 606 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 ETS2P15036 469 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 HOXB9P17482 250 aaPredicted RBP9.97□□□□□ -0.81
RFFL-204ENST00000414419 SLC6A2P23975 617 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 ART1P52961 327 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 ARFIP2P53365 341 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 IST1P53990 364 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 SLC35A1P78382 337 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 CDK6Q00534 326 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 PLAURQ03405 335 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 KEAP1Q14145 624 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 REEP3Q6NUK4 255 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 TFAP2EQ6VUC0 442 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 STAC2Q6ZMT1 411 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 GALNT5Q7Z7M9 940 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 DHDDSQ86SQ9 333 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 MSRB3Q8IXL7 192 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 ZNF100Q8IYN0 542 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 CLIP4Q8N3C7 705 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 STEAP2Q8NFT2 490 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 NFKBIDQ8NI38 313 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 PIGXQ8TBF5 258 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 TSPEARQ8WU66 669 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 ZNF775Q96BV0 537 aaPredicted RBP9.97□□□□□ -0.81
RFFL-204ENST00000414419 PIK3IP1Q96FE7 263 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 ARL5BQ96KC2 179 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 ZNF607Q96SK3 696 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 NAA11Q9BSU3 229 aaPredicted RBP9.97□□□□□ -0.81
RFFL-204ENST00000414419 TMEM120AQ9BXJ8 343 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 OR11A1Q9GZK7 315 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 LIME1Q9H400 295 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 CCM2LQ9NUG4 571 aaPredicted RBP9.97□□□□□ -0.81
RFFL-204ENST00000414419 ZNF446Q9NWS9 450 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 C6orf203Q9P0P8 240 aaPredicted RBP9.97□□□□□ -0.81
RFFL-204ENST00000414419 RPS6KB2Q9UBS0 482 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 SLC13A4Q9UKG4 626 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 TRAPPC4Q9Y296 219 aa9.97□□□□□ -0.81
RFFL-204ENST00000414419 HRNRQ86YZ3 2850 aaPredicted RBP9.96□□□□□ -0.81
RFFL-204ENST00000414419 CSMD1Q96PZ7 3565 aa9.96□□□□□ -0.81
RFFL-204ENST00000414419 DSCAMO60469 2012 aa9.96□□□□□ -0.81
RFFL-204ENST00000414419 OTOGQ6ZRI0 2925 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms