RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 OR4Q2P0C623 313 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 TRIM61Q5EBN2 209 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 Q6ZRG5 221 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC2A13Q96QE2 648 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 NUDT19A8MXV4 375 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 FOXD2O60548 495 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ACKR3P25106 362 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 PLAG1Q6DJT9 500 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ZFAND4Q86XD8 727 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ASB17Q8WXJ9 295 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 TMEM98Q9Y2Y6 226 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ANKRD31Q8N7Z5 1873 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 SMIM28A0A1B0GU29 152 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 SPATA31C1P0DKV0 1188 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 HNF1AP20823 631 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 RPS21P63220 83 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 EARS2Q5JPH6 523 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 CDHR3Q6ZTQ4 885 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ERVMER34-1Q9H9K5 563 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ASH2LQ9UBL3 628 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 V9GY05 133 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 MAGI3Q5TCQ9 1506 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC9B1P1A6NJY1 282 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 HEXAP06865 529 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 VASNQ6EMK4 673 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 SFT2D1Q8WV19 159 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 TRIB3Q96RU7 358 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ARHGAP39Q9C0H5 1083 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 PCDHAC2Q9Y5I4 1007 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ANHXE9PGG2 379 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 APBB3O95704 486 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC6A8P48029 635 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 SULT1A2P50226 295 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 ZNF154Q13106 437 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 C3orf38Q5JPI3 329 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 C2CD4AQ8NCU7 369 aaPredicted RBP12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 OR51I2Q9H344 312 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 PDZD7Q9H5P4 517 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 HELTA6NFD8 242 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 ZNF860A6NHJ4 632 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 GSTP1P09211 210 aaKnown RBP12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 DRD2P14416 443 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 POLR2CP19387 275 aaPredicted RBP12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 TGM1P22735 817 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 POFUT1Q9H488 388 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 TAF9BQ9HBM6 251 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC2A9Q9NRM0 540 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 ACOXLQ9NUZ1 547 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 DEDDO75618 318 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 CARD18P57730 90 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 LILRA4P59901 499 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC14A2Q15849 920 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 DUSP6Q16828 381 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 CELF5Q8N6W0 485 aaKnown RBP12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 WDR18Q9BV38 432 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 ARNT2Q9HBZ2 717 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 GNG12Q9UBI6 72 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 FAM163BP0C2L3 166 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 MICAQ29983 383 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 OR11L1Q8NGX0 322 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 MARC2Q969Z3 335 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 KCNK13Q9HB14 408 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 SVILO95425 2214 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 STC2O76061 302 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 GABREP78334 506 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 ZNF90Q03938 601 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 VGLL4Q14135 290 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 STK11Q15831 433 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 MKXQ8IYA7 352 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 CSNK1A1LQ8N752 337 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 ASB11Q8WXH4 323 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 DYNLRB1Q9NP97 96 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 THSD1Q9NS62 852 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 RGPD8O14715 1765 aaPredicted RBP12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 OSMP13725 252 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 MTHFD2P13995 350 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 VIPR2P41587 438 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 PPP1R3AQ16821 1122 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 FCRLBQ6BAA4 426 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 OR56B1Q8NGI3 324 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 RBPMSQ93062 196 aaKnown RBP12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 RASD2Q96D21 266 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 DECR2Q9NUI1 292 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 KLF8O95600 359 aaPredicted RBP12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 ILDR1Q86SU0 546 aaPredicted RBP12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 CCNL2Q96S94 520 aaPredicted RBP12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 FBXO8Q9NRD0 319 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 SMLR1H3BR10 107 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC16A6O15403 523 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 PFKMP08237 780 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 SFTPDP35247 375 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 TPPP2P59282 170 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 C18orf63Q68DL7 685 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 PGBD5Q8N414 524 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 OR52N2Q8NGI0 321 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 MS4A4EQ96PG1 132 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 MVB12BQ9H7P6 319 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 NAV1Q8NEY1 1877 aa12.54□□□□□ -0.4
CCDC88A-204ENST00000413716 SULT1A3P0DMM9 295 aa12.53□□□□□ -0.4
CCDC88A-204ENST00000413716 SULT1A4P0DMN0 295 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms