RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 GCKP35557 465 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 DLX5P56178 289 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 ALDH6A1Q02252 535 aaKnown RBP16.35■□□□□ 0.21
SDC1-203ENST00000403076 RNFT1Q5M7Z0 435 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 RPUSD3Q6P087 351 aaKnown RBP16.35■□□□□ 0.21
SDC1-203ENST00000403076 WDR88Q6ZMY6 472 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 STK32CQ86UX6 486 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 HIPK1Q86Z02 1210 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 P3H2Q8IVL5 708 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 SVOPLQ8N434 492 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 OR4C15Q8NGM1 316 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 EME1Q96AY2 570 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 SLC25A18Q9H1K4 315 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 LDAHQ9H6V9 325 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 EXO5Q9H790 373 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 OAZ3Q9UMX2 235 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 MED31Q9Y3C7 131 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 MGAQ8IWI9 3026 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 TMEM72A0PK05 275 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 SH3PXD2BA1X283 911 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 C7orf72A4D263 438 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 KPNA4O00629 521 aaPredicted RBP16.34■□□□□ 0.21
SDC1-203ENST00000403076 TFPIP10646 304 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 PEPDP12955 493 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 ZNF17P17021 662 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 RBM34P42696 430 aaKnown RBP16.34■□□□□ 0.21
SDC1-203ENST00000403076 LIMS1P48059 325 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 SEC23BQ15437 767 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 INAQ16352 499 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 MICAQ29983 383 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 SHQ1Q6PI26 577 aaKnown RBP16.34■□□□□ 0.21
SDC1-203ENST00000403076 LINC00114Q6XXX2 140 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 LSRQ86X29 649 aaPredicted RBP16.34■□□□□ 0.21
SDC1-203ENST00000403076 HS3ST5Q8IZT8 346 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 LINC00471Q8N535 108 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 OR4K5Q8NGD3 323 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 RELTQ969Z4 430 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 NRBF2Q96F24 287 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 CIB1Q99828 191 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 TSPAN10Q9H1Z9 355 aaPredicted RBP16.34■□□□□ 0.21
SDC1-203ENST00000403076 KRCC1Q9NPI7 259 aaPredicted RBP16.34■□□□□ 0.21
SDC1-203ENST00000403076 STOML1Q9UBI4 398 aa16.34■□□□□ 0.21
SDC1-203ENST00000403076 H3BML4 177 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 ERVH48-1M5A8F1 160 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 CRYABP02511 175 aaKnown RBP16.33■□□□□ 0.2
SDC1-203ENST00000403076 PRKACGP22612 351 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 IFNGR2P38484 337 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 UGT2B15P54855 530 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 SELENBP1Q13228 472 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 LRRC36Q1X8D7 754 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 OTUD3Q5T2D3 398 aaPredicted RBP16.33■□□□□ 0.2
SDC1-203ENST00000403076 MBOAT2Q6ZWT7 520 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 NRMQ8IXM6 262 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 CDK20Q8IZL9 346 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 RNF113BQ8IZP6 322 aaKnown RBP16.33■□□□□ 0.2
SDC1-203ENST00000403076 OR10G2Q8NGC3 310 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 PIGXQ8TBF5 258 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 DDIT4LQ96D03 193 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 TAAR6Q96RI8 345 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 UBL7Q96S82 380 aaPredicted RBP16.33■□□□□ 0.2
SDC1-203ENST00000403076 FUZQ9BT04 418 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 TMEM43Q9BTV4 400 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 C9orf16Q9BUW7 83 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 KLHL4Q9C0H6 718 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 SLC6A15Q9H2J7 730 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 TMEM185BQ9H7F4 350 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 SLC6A5Q9Y345 797 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 ZNF337Q9Y3M9 751 aa16.33■□□□□ 0.2
SDC1-203ENST00000403076 MAGED1Q9Y5V3 778 aaPredicted RBP16.33■□□□□ 0.2
SDC1-203ENST00000403076 A8MVM7 634 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 EFNA2O43921 213 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 PIP5K1CO60331 668 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 OPN1LWP04000 364 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 IL11P20809 199 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 ELK4P28324 431 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 MAP2K6P52564 334 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 B3GALT5-AS1P59052 145 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 CRYZQ08257 329 aaKnown RBP16.32■□□□□ 0.2
SDC1-203ENST00000403076 LY6DQ14210 128 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 TMEM44Q2T9K0 475 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 LPCAT4Q643R3 524 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 C3orf33Q6P1S2 294 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 FAM180AQ6UWF9 173 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 ZBTB49Q6ZSB9 765 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 C10orf53Q8N6V4 93 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 SMPDL3BQ92485 455 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 BARD1Q99728 777 aaKnown RBP16.32■□□□□ 0.2
SDC1-203ENST00000403076 OR11A1Q9GZK7 315 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 RASSF4Q9H2L5 321 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 ACKR4Q9NPB9 350 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 LOC400499M0QZD8 3231 aa16.32■□□□□ 0.2
SDC1-203ENST00000403076 PKD1L2Q7Z442 2459 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 FREM3P0C091 2139 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 NPIPA5E9PKD4 350 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 LINC01387J3KSC0 135 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 PDLIM1O00151 329 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 ZNF208O43345 1280 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 IFI30P13284 250 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 SFTPDP35247 375 aa16.31■□□□□ 0.2
SDC1-203ENST00000403076 LSM11P83369 360 aaKnown RBP eCLIP16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms