RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 NEIL2Q969S2 332 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 A0A1W2PPH5 198 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 METTL15A6NJ78 407 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC9B1P1A6NJY1 282 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 G3V2L1 256 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 M0QZQ0 153 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC16A7O60669 478 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 HLA-AP01891 365 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 MT-ND4P03905 459 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 OR2A12Q8NGT7 310 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 LMO3Q8TAP4 145 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 ACOT11Q8WXI4 607 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 SMIM3Q9BZL3 60 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 GORASP2Q9H8Y8 452 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 SMCO4Q9NRQ5 59 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 FOXD2O60548 495 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 BCKDHBP21953 392 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 WDR5P61964 334 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 CXADRP78310 365 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 HMGN3Q15651 99 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 FAM57BQ71RH2 274 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 LRRC18Q8N456 261 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 SIMC1Q8NDZ2 872 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 OR4A16Q8NH70 328 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 DTD2Q96FN9 168 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 PPA2Q9H2U2 334 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 OLAHQ9NV23 265 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 LHX6Q9UPM6 363 aa11.98□□□□□ -0.49
CCDC88C-204ENST00000389857 TMEM269A0A1B0GVZ9 245 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 GPR39O43194 453 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 SERPINA12Q8IW75 414 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 TCEAL2Q9H3H9 227 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 RPH3ALQ9UNE2 315 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF281Q9Y2X9 895 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 TRAV27A0A087WT01 109 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC22A23A1A5C7 686 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 GALR3O60755 368 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 ETV4P43268 484 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 IDO2Q6ZQW0 420 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 NDUFAF7Q7L592 441 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 DECR2Q9NUI1 292 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 C20orf202A1L168 122 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 OIP5O43482 229 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 IL3RAP26951 378 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 CD6P30203 668 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 AADACL3Q5VUY0 350 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 PPP1R3BQ86XI6 285 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 GRAMD2AQ8IUY3 354 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 DTWD1Q8N5C7 304 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 ABHD11Q8NFV4 315 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 BTF3L4Q96K17 158 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 HRASLSQ9HDD0 168 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 IL26Q9NPH9 171 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 TRAPPC2LQ9UL33 140 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 KNDC1Q76NI1 1749 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 H3BMQ9 156 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 TUSC2O75896 110 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 CT45A6P0DMU7 189 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 CT45A5P0DMU8 189 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 CT45A7P0DMV0 189 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 CT45A8P0DMV1 189 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 CT45A9P0DMV2 189 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC2A1P11166 492 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 HOXC13P31276 330 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 HTR5AP47898 357 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 CT45A2Q5DJT8 189 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 CT45A1Q5HYN5 189 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 DESI1Q6ICB0 168 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 RBMS3Q6XE24 437 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 CDHR3Q6ZTQ4 885 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC16A14Q7RTX9 510 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 MISPQ8IVT2 679 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 CT45A3Q8NHU0 189 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 RTP4Q96DX8 246 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC41A2Q96JW4 573 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF75AQ96N20 296 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 TIMM29Q9BSF4 260 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 NTMT1Q9BV86 223 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 OPRL1P41146 370 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 HBG1P69891 147 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 HBG2P69892 147 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 TLE4Q04727 773 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 PDE7AQ13946 482 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 DCAF12Q5T6F0 453 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 C5orf46Q6UWT4 87 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 OR56B4Q8NH76 319 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 ADOQ96SZ5 270 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 ACKR4Q9NPB9 350 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 TXNL4BQ9NX01 149 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 NPIPA5A0A0B4J1W7 369 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 MROH6A6NGR9 719 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 MCRIP1C9JLW8 97 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 NPIPA7E9PJI5 369 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 ITGB2P05107 769 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 PRSS56P0CW18 603 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 NPIPA8P0DM63 369 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 DLX5P56178 289 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 CHRNEQ04844 493 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 SHISA6Q6ZSJ9 500 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 UCN3Q969E3 161 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms