RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 UPRTQ96BW1 309 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 C16orf45Q96MC5 204 aaPredicted RBP1.95□□□□□ -2.1
CD44-239ENST00000639002 KLHDC3Q9BQ90 382 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 ZNF670Q9BS34 389 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 RAB17Q9H0T7 212 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 C1orf21Q9H246 121 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 POLD4Q9HCU8 107 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 LHX9Q9NQ69 397 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 C1orf123Q9NWV4 160 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 CRLS1Q9UJA2 301 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 BLOC1S6Q9UL45 172 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 NUDCQ9Y266 331 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 COL27A1Q8IZC6 1860 aaPredicted RBP1.94□□□□□ -2.1
CD44-239ENST00000639002 DOCK9Q9BZ29 2069 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 PPIAL4EA0A075B759 164 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 PPIAL4CA0A0B4J2A2 164 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 KRT87PA6NCN2 255 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 COLCA2A8K830 154 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 PP2D1A8MPX8 630 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 PPIAL4DF5H284 164 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 LGALS8O00214 317 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 TNFSF13O75888 250 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 MRPL3P09001 348 aaKnown RBP1.94□□□□□ -2.1
CD44-239ENST00000639002 PPIAL4FP0DN26 164 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 KRT13P13646 458 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 ETS1P14921 441 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 ZNF14P17017 642 aaPredicted RBP1.94□□□□□ -2.1
CD44-239ENST00000639002 CELP19835 753 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 IL10P22301 178 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 ATP5A1P25705 553 aaKnown RBP1.94□□□□□ -2.1
CD44-239ENST00000639002 ASMTP46597 345 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 GMFBP60983 142 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 IL1RL1Q01638 556 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 CSTF1Q05048 431 aaKnown RBP1.94□□□□□ -2.1
CD44-239ENST00000639002 SNX1Q13596 522 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 GAMTQ14353 236 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 PSG5Q15238 335 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 C5orf47Q569G3 176 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 C1orf146Q5VVC0 180 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 RBM43Q6ZSC3 357 aaKnown RBP1.94□□□□□ -2.1
CD44-239ENST00000639002 TMEM26Q6ZUK4 368 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 LANCL3Q6ZV70 420 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 ARCQ7LC44 396 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 RALGPS2Q86X27 583 aaPredicted RBP1.94□□□□□ -2.1
CD44-239ENST00000639002 KDM8Q8N371 416 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 RAB7BQ96AH8 199 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 MS4A14Q96JA4 679 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 ZNF641Q96N77 438 aaPredicted RBP1.94□□□□□ -2.1
CD44-239ENST00000639002 TSNARE1Q96NA8 513 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 SPIN2AQ99865 258 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 SPIN2BQ9BPZ2 258 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 ZNF2Q9BSG1 426 aaPredicted RBP1.94□□□□□ -2.1
CD44-239ENST00000639002 HDHD3Q9BSH5 251 aaPredicted RBP1.94□□□□□ -2.1
CD44-239ENST00000639002 RWDD1Q9H446 243 aaPredicted RBP1.94□□□□□ -2.1
CD44-239ENST00000639002 SLC25A22Q9H936 323 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 MARCOQ9UEW3 520 aaPredicted RBP1.94□□□□□ -2.1
CD44-239ENST00000639002 TBK1Q9UHD2 729 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 IL20RAQ9UHF4 553 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 RRP15Q9Y3B9 282 aaKnown RBP1.94□□□□□ -2.1
CD44-239ENST00000639002 AP1M2Q9Y6Q5 423 aa1.94□□□□□ -2.1
CD44-239ENST00000639002 CLSPNQ9HAW4 1339 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 SYNRGQ9UMZ2 1314 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 FAM74A7A6NL05 159 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 WASHC1A8K0Z3 465 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 WASH3PC4AMC7 463 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 SULT2B1O00204 365 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 LAD1O00515 517 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 HCRTR1O43613 425 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 SEC22BO75396 215 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 STX11O75558 287 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 KIAA0754O94854 1291 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 IGHDP01880 384 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 PDHBP11177 359 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 NMT1P30419 496 aaKnown RBP1.93□□□□□ -2.1
CD44-239ENST00000639002 HSD17B7P56937 341 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 SLC10A7Q0GE19 358 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 NDUFA9Q16795 377 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 ANKDD1AQ495B1 522 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 FAM74A3Q4VXF1 159 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 LIPNQ5VXI9 398 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 RAET1GQ6H3X3 334 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 FAM199XQ6PEV8 388 aaPredicted RBP1.93□□□□□ -2.1
CD44-239ENST00000639002 KDELC1Q6UW63 502 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 UNC5DQ6UXZ4 953 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 WASH2PQ6VEQ5 465 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 Q6ZR03 302 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 LPCAT2Q7L5N7 544 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 C12orf56Q8IXR9 622 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 HDDC3Q8N4P3 179 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 STKLD1Q8NE28 680 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 OR2L8Q8NGY9 312 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 OR6X1Q8NH79 312 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 CCDC110Q8TBZ0 833 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 AENQ8WTP8 325 aaKnown RBP1.93□□□□□ -2.1
CD44-239ENST00000639002 CTNNBL1Q8WYA6 563 aaPredicted RBP1.93□□□□□ -2.1
CD44-239ENST00000639002 TMEM186Q96B77 213 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 TIMD4Q96H15 378 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 PGLYRP4Q96LB8 373 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 CFAP53Q96M91 514 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 FAM111AQ96PZ2 611 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms