RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 BMP2P12643 396 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 SLC6A2P23975 617 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 AQP1P29972 269 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 SSTR2P30874 369 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 KIR2DL3P43628 341 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 DLX5P56178 289 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 COPZ1P61923 177 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 PLAURQ03405 335 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 TLE4Q04727 773 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 SCARB2Q14108 478 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 ZNF239Q16600 458 aaKnown RBP17.46■□□□□ 0.39
SS18-209ENST00000578595 REEP3Q6NUK4 255 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 DLEU7Q6UYE1 221 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 SNX32Q86XE0 403 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 KRT73Q86Y46 540 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 KIF18BQ86Y91 864 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 ZZZ3Q8IYH5 903 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 C10orf111Q8N326 155 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 TSPEARQ8WU66 669 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 SLC25A43Q8WUT9 341 aaPredicted RBP17.46■□□□□ 0.39
SS18-209ENST00000578595 ANKRD27Q96NW4 1050 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 NSRP1Q9H0G5 558 aaKnown RBP17.46■□□□□ 0.39
SS18-209ENST00000578595 OPN3Q9H1Y3 402 aaPredicted RBP17.46■□□□□ 0.39
SS18-209ENST00000578595 COQ10BQ9H8M1 238 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 SLC24A3Q9HC58 644 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 SAR1AQ9NR31 198 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 GALNT8Q9NY28 637 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 CHRNA9Q9UGM1 479 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 ANGPT4Q9Y264 503 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 ANKRD17O75179 2603 aaKnown RBP17.46■□□□□ 0.39
SS18-209ENST00000578595 CDHR4A6H8M9 788 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 SYT5O00445 386 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 MRASO14807 208 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 PGM3O95394 542 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 IGFBP2P18065 325 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 APOBEC1P41238 236 aaKnown RBP17.45■□□□□ 0.38
SS18-209ENST00000578595 EPS8Q12929 822 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 TRMT5Q32P41 509 aaKnown RBP17.45■□□□□ 0.38
SS18-209ENST00000578595 SYT14P1Q58G82 188 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 RUNDC3AQ59EK9 446 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 RNF220Q5VTB9 566 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 GTF2IRD2BQ6EKJ0 949 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 FAM214BQ7L5A3 538 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 ZNF550Q7Z398 422 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 BTLAQ7Z6A9 289 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 GTF2IRD2Q86UP8 949 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 TMEM200AQ86VY9 491 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 DPP10Q8N608 796 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 C10orf82Q8WW14 230 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 GMPPAQ96IJ6 420 aaPredicted RBP17.45■□□□□ 0.38
SS18-209ENST00000578595 ZNF317Q96PQ6 595 aaPredicted RBP17.45■□□□□ 0.38
SS18-209ENST00000578595 SPATA5L1Q9BVQ7 753 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 SPATA9Q9BWV2 254 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 SLC13A4Q9UKG4 626 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 ADGRG4Q8IZF6 3080 aa17.45■□□□□ 0.38
SS18-209ENST00000578595 TMED7-TICAM2A0A0A6YYA0 188 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 LOC100653049A0A140TA62 436 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 SULT2B1O00204 365 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 FRS3O43559 492 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 DNAJA2O60884 412 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 ADAM11O75078 769 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 KRT34O76011 436 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 GPX2P18283 190 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 TACR3P29371 465 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 PEX19P40855 299 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 KIR2DL2P43627 348 aaPredicted RBP17.44■□□□□ 0.38
SS18-209ENST00000578595 HTR3AP46098 478 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 POLR2HP52434 150 aaKnown RBP17.44■□□□□ 0.38
SS18-209ENST00000578595 CYLC2Q14093 348 aaPredicted RBP17.44■□□□□ 0.38
SS18-209ENST00000578595 SELPLGQ14242 412 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 EXOC3L2Q2M3D2 409 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 FBXL19-AS1Q494R0 122 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 PRAMEF8Q5VWM4 474 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 PRAMEF7Q5VXH5 474 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 AP1ARQ63HQ0 302 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 REP15Q6BDI9 236 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 FCRLAQ7L513 359 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 CLIP4Q8N3C7 705 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 ABHD3Q8WU67 409 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 STARD4Q96DR4 205 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 ZHX1-C8orf76Q96EF9 292 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 ZNF607Q96SK3 696 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 SLC39A3Q9BRY0 314 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 CCDC106Q9BWC9 280 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 C12orf49Q9H741 205 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 BCL2L10Q9HD36 194 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 ARMCX1Q9P291 453 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 TMED7Q9Y3B3 224 aa17.44■□□□□ 0.38
SS18-209ENST00000578595 TEX15Q9BXT5 2789 aa17.43■□□□□ 0.38
SS18-209ENST00000578595 TUBAL3A6NHL2 446 aa17.43■□□□□ 0.38
SS18-209ENST00000578595 ETV2O00321 342 aaPredicted RBP17.43■□□□□ 0.38
SS18-209ENST00000578595 MSTNO14793 375 aa17.43■□□□□ 0.38
SS18-209ENST00000578595 ETS2P15036 469 aa17.43■□□□□ 0.38
SS18-209ENST00000578595 ENPP1P22413 925 aa17.43■□□□□ 0.38
SS18-209ENST00000578595 CXCR1P25024 350 aa17.43■□□□□ 0.38
SS18-209ENST00000578595 NCALDP61601 193 aa17.43■□□□□ 0.38
SS18-209ENST00000578595 CSNK2A1P68400 391 aaPredicted RBP17.43■□□□□ 0.38
SS18-209ENST00000578595 ZSWIM7Q19AV6 140 aa17.43■□□□□ 0.38
SS18-209ENST00000578595 TMEM201Q5SNT2 666 aa17.43■□□□□ 0.38
SS18-209ENST00000578595 FBXW10Q5XX13 1052 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms