RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 OR52I1Q8NGK6 324 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 OR9Q1Q8NGQ5 310 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 OR2A12Q8NGT7 310 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 OR5AK3PQ8NH89 298 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 ANGPTL6Q8NI99 470 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 VANGL1Q8TAA9 524 aaPredicted RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 BBS10Q8TAM1 723 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 TMEM163Q8TC26 289 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 ZFAND1Q8TCF1 268 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 SFXN5Q8TD22 340 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 HCAR2Q8TDS4 363 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 CREB3L4Q8TEY5 395 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 SKA2Q8WVK7 121 aaPredicted RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 SLC5A11Q8WWX8 675 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 JPH3Q8WXH2 748 aaPredicted RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 OR5P2Q8WZ92 322 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 SMPDL3AQ92484 453 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 TM9SF4Q92544 642 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 AP3S1Q92572 193 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 GLYATL1Q969I3 302 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 TRIM63Q969Q1 353 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 UBE2E3Q969T4 207 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 CIDECQ96AQ7 238 aaPredicted RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 ZNF689Q96CS4 500 aaPredicted RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 DTD2Q96FN9 168 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 MED8Q96G25 268 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 TMEM19Q96HH6 336 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 CEP19Q96LK0 163 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 LINC00615Q96LM1 132 aaPredicted RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 ZNF354BQ96LW1 612 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 FOPNLQ96NB1 174 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 ZNF582Q96NG8 517 aaPredicted RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 TEFMQ96QE5 360 aaKnown RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 PRR25Q96S07 402 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 PKP4Q99569 1192 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 KCNS3Q9BQ31 491 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 KATNB1Q9BVA0 655 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 C1orf43Q9BWL3 253 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 GTPBP2Q9BX10 602 aaKnown RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 BBS2Q9BXC9 721 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 MS4A8Q9BY19 250 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 NLNQ9BYT8 704 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 PRRG3Q9BZD7 231 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 POLR2J2Q9GZM3 115 aaKnown RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 SPNS1Q9H2V7 528 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 RHBGQ9H310 441 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 FAM83DQ9H4H8 585 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 ANKRD19PQ9H560 264 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 C11orf49Q9H6J7 331 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 PPP1R3EQ9H7J1 279 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 CXorf36Q9H7Y0 433 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 NT5DC2Q9H857 520 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 RNF121Q9H920 327 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 MARCH7Q9H992 704 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 RMI1Q9H9A7 625 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 ANKRA2Q9H9E1 313 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 PELI2Q9HAT8 420 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 AMBNQ9NP70 447 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 CD93Q9NPY3 652 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 STARD7Q9NQZ5 370 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 MRPL17Q9NRX2 175 aaKnown RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 ST6GALNAC1Q9NSC7 600 aaPredicted RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 ACSS1Q9NUB1 689 aaPredicted RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 ACOXLQ9NUZ1 547 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 DNAJC27Q9NZQ0 273 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 MUTYHQ9UIF7 546 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 PHF11Q9UIL8 331 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 KLHL21Q9UJP4 597 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 FBXW2Q9UKT8 454 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 OGDHLQ9ULD0 1010 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 A4GNTQ9UNA3 340 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 SNX7Q9UNH6 387 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 SSR3Q9UNL2 185 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 ITM2BQ9Y287 266 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 EXOSC1Q9Y3B2 195 aaKnown RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 RPL36Q9Y3U8 105 aaKnown RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 MMP24Q9Y5R2 645 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 SNX8Q9Y5X2 465 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 AUP1Q9Y679 476 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 RNF215Q9Y6U7 377 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 DOCK9Q9BZ29 2069 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 FANCMQ8IYD8 2048 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 TRPM6Q9BX84 2022 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 CPAMD8Q8IZJ3 1885 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 TMEM131Q92545 1883 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 MPDZO75970 2070 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 DOCK8Q8NF50 2099 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 A0A0A6YYD5 115 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 A0A0G2JMP0 313 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 A0A0X1KG70 313 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 C17orf113A0A1B0GUU1 675 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 TRDV1A0A1B0GX56 115 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 A0A1W2PQL4 384 aaPredicted RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 C7orf66A4D0T2 115 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 CCDC182A6NF36 153 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 ANKRD61A6NGH8 418 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 A6NL46 340 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 OR2AG2A6NM03 316 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 CENPXA8MT69 81 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 A8MX80 341 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms