RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 SNX15Q9NRS6 342 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 HOMER3Q9NSC5 361 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 LIN7CQ9NUP9 197 aaKnown RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 TMEM160Q9NX00 188 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 PSD3Q9NYI0 1048 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 COPS7AQ9UBW8 275 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 EXO1Q9UQ84 846 aaKnown RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 DLGAP4Q9Y2H0 992 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 MRPS18CQ9Y3D5 142 aaKnown RBP3.16□□□□□ -1.9
LIMA1-206ENST00000550611 OARD1Q9Y530 152 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 RYR2Q92736 4967 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 KIAA1549Q9HCM3 1950 aa3.16□□□□□ -1.9
LIMA1-206ENST00000550611 CR1P17927 2039 aa3.15□□□□□ -1.9
LIMA1-206ENST00000550611 HEATR5AQ86XA9 2040 aa3.15□□□□□ -1.9
LIMA1-206ENST00000550611 IQANK1A0A1B0GTG1 560 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 C2orf92A0A1B0GVN3 265 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-206ENST00000550611 FAM90A18PA6NE21 464 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 FAM90A16PA6NEW6 464 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 IFITM10A6NMD0 228 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 FAM90A9PA6NNJ1 464 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 VGLL3A8MV65 326 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 FAM90A5PA8MXJ8 464 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 HS3ST1O14792 307 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 EMC8O43402 210 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 TMPRSS11DO60235 418 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 ZNF500O60304 480 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-206ENST00000550611 OR10H2O60403 315 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 ICOSLGO75144 302 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 WISP3O95389 354 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-206ENST00000550611 KRT14P02533 472 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 CT62P0C5K7 136 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 RHOXF2BP0C7M4 288 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 FAM90A15PP0C7V4 464 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 FAM90A14PP0C7W9 464 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 DANCRP0C864 163 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 SLC35E2BP0CK96 405 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 SLC35E2P0CK97 266 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 COX7A2P14406 83 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 IL11P20809 199 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 TBXA2RP21731 343 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 CPN2P22792 545 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 FPR3P25089 353 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 ABCD3P28288 659 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 IDUAP35475 653 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 ARFIP1P53367 373 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 HNRNPH2P55795 449 aaKnown RBP3.15□□□□□ -1.91
LIMA1-206ENST00000550611 HERVK_113P63132 956 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 ERVK-8P63133 956 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 PLIN5Q00G26 463 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 SRYQ05066 204 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 TGM3Q08188 693 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 KIF5AQ12840 1032 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 SLAMF1Q13291 335 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 CBFBQ13951 182 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 CRYMQ14894 314 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 TRIP13Q15645 432 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-206ENST00000550611 GALNTL6Q49A17 601 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 TMEM35AQ53FP2 167 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 BEX5Q5H9J7 111 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 CDKL4Q5MAI5 379 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 C18orf63Q68DL7 685 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 OR4C11Q6IEV9 310 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 FAM45BPQ6NSW5 357 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 SLC30A6Q6NXT4 461 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 TTC27Q6P3X3 843 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 SCIMPQ6UWF3 145 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 ENPP6Q6UWR7 440 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 ANGPTL8Q6UXH0 198 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 ZNF704Q6ZNC4 412 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-206ENST00000550611 PTCHD4Q6ZW05 846 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 GSTA5Q7RTV2 222 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 ZNF550Q7Z398 422 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 NUP54Q7Z3B4 507 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 GPR180Q86V85 440 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 ANKRD13BQ86YJ7 626 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 LAS2Q8IYD9 372 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 TAGAPQ8N103 731 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 ZCCHC7Q8N3Z6 543 aaKnown RBP3.15□□□□□ -1.91
LIMA1-206ENST00000550611 OR1J4Q8NGS1 313 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 SGMS2Q8NHU3 365 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 B4GALNT2Q8NHY0 566 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 FAM45AQ8TCE6 357 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 ANKRD49Q8WVL7 239 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 RIT1Q92963 219 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 UCN3Q969E3 161 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 PGM2Q96G03 612 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 VPS39Q96JC1 886 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 HS6ST2Q96MM7 605 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 NODALQ96S42 347 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 PELOQ9BRX2 385 aaKnown RBP3.15□□□□□ -1.91
LIMA1-206ENST00000550611 SLC39A3Q9BRY0 314 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 MED18Q9BUE0 208 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 EFCAB11Q9BUY7 163 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 ERVK-6Q9BXR3 956 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 ZNF717Q9BY31 904 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-206ENST00000550611 OPN3Q9H1Y3 402 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-206ENST00000550611 CXorf56Q9H5V9 222 aa3.15□□□□□ -1.91
LIMA1-206ENST00000550611 RPF2Q9H7B2 306 aaKnown RBP3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms