RNA–Protein interactions for RNA: ENST00000495899.1

MRPL55-233, Transcript of mitochondrial ribosomal protein L55, human

TSL 2

Gene MRPL55, Length 790 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-233	ENST00000495899	PCYT1A	P49585	367 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	CLK1	P49759	484 aa	Known RBP	11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	MAP2K6	P52564	334 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	PLAUR	Q03405	335 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	MERTK	Q12866	999 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	TMEM176B	Q3YBM2	270 aa	Predicted RBP	11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	COQ5	Q5HYK3	327 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	GCNT6	Q5T4J0	391 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	MRPL2	Q5T653	305 aa	Known RBP	11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	RNF220	Q5VTB9	566 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	REEP3	Q6NUK4	255 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	C3orf33	Q6P1S2	294 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	PLXDC2	Q6UX71	529 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	PLEKHM3	Q6ZWE6	761 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	GRINA	Q7Z429	371 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	KIF18B	Q86Y91	864 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	MCEMP1	Q8IX19	187 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	GCNT2	Q8N0V5	402 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	ZNF563	Q8TA94	476 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	BBS10	Q8TAM1	723 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	SLC25A43	Q8WUT9	341 aa	Predicted RBP	11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	SLC35B4	Q969S0	331 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	CPNE4	Q96A23	557 aa	Predicted RBP	11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	C14orf79	Q96F83	325 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	ANKRD27	Q96NW4	1050 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	CCDC106	Q9BWC9	280 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	PRRG4	Q9BZD6	226 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	TRIM8	Q9BZR9	551 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	TMEM185B	Q9H7F4	350 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	SAR1A	Q9NR31	198 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	KCNN3	Q9UGI6	736 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	PACSIN3	Q9UKS6	424 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	SPIN1	Q9Y657	262 aa	Predicted RBP	11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	PCNX1	Q96RV3	2341 aa		11.09	□□□□□ -0.63
MRPL55-233	ENST00000495899	FREM3	P0C091	2139 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	CFAP73	A6NFT4	308 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	MSTN	O14793	375 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	AQP8	O94778	261 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	OPN1LW	P04000	364 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	ARAF	P10398	606 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	UQCRC1	P31930	480 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	RYK	P34925	604 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	SFTPD	P35247	375 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	SLC1A3	P43003	542 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	KIR2DL2	P43627	348 aa	Predicted RBP	11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	IDH2	P48735	452 aa	Known RBP	11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	AGFG1	P52594	562 aa	Known RBP	11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	RAC3	P60763	192 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	CDK6	Q00534	326 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	KLF10	Q13118	480 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	GUSBP1	Q15486	140 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	MAPRE2	Q15555	327 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	FAM214B	Q7L5A3	538 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	ZNF550	Q7Z398	422 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	GDF7	Q7Z4P5	450 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	HMGN2P46	Q86SG4	172 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	DHDDS	Q86SQ9	333 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	KRT73	Q86Y46	540 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	ZNF295-AS1	Q8N0V1	137 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	MAL2	Q969L2	176 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	STARD4	Q96DR4	205 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	REXO5	Q96IC2	774 aa	Known RBP	11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	GMPPA	Q96IJ6	420 aa	Predicted RBP	11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	CGREF1	Q99674	301 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	SH3GL1	Q99961	368 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	CPPED1	Q9BRF8	314 aa	Predicted RBP	11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	SPATA5L1	Q9BVQ7	753 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	SPATA9	Q9BWV2	254 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	GP6	Q9HCN6	339 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	RLIM	Q9NVW2	624 aa		11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	ZNF443	Q9Y2A4	671 aa	Predicted RBP	11.08	□□□□□ -0.64
MRPL55-233	ENST00000495899	BBIP1	A8MTZ0	92 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899		A8MXE2	369 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	EEF1E1-BLOC1S5	C9J1V9	151 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	EEF1E1	O43324	174 aa	Known RBP	11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	ADAM11	O75078	769 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	PLG	P00747	810 aa	Predicted RBP	11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	CD8B	P10966	210 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	PRF1	P14222	555 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	SLC6A2	P23975	617 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	SHC1	P29353	583 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	SLC7A1	P30825	629 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	SORD	Q00796	357 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	RBBP4	Q09028	425 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	EPS8	Q12929	822 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	NFYC	Q13952	458 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	CYLC2	Q14093	348 aa	Predicted RBP	11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	RNPS1	Q15287	305 aa	Known RBP	11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	ADRM1	Q16186	407 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	OCLN	Q16625	522 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	ZNF311	Q5JNZ3	666 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	ZNF836	Q6ZNA1	936 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	VRK2	Q86Y07	508 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	SLC43A2	Q8N370	569 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	CNEP1R1	Q8N9A8	125 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	ATP6V1C2	Q8NEY4	427 aa		11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	RBM24	Q9BX46	236 aa	Known RBP	11.07	□□□□□ -0.64
MRPL55-233	ENST00000495899	IKZF5	Q9H5V7	419 aa		11.07	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms