RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 RLIMQ9NVW2 624 aa15.74■□□□□ 0.11
COL6A1-204ENST00000486023 HRNRQ86YZ3 2850 aaPredicted RBP15.74■□□□□ 0.11
COL6A1-204ENST00000486023 CELSR1Q9NYQ6 3014 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 MAP1AP78559 2803 aaPredicted RBP15.73■□□□□ 0.11
COL6A1-204ENST00000486023 AKAP6Q13023 2319 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 TMEM247A6NEH6 219 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 ADAM11O75078 769 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 DBIP07108 87 aaKnown RBP15.73■□□□□ 0.11
COL6A1-204ENST00000486023 YES1P07947 543 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 GKN3PP0CG01 181 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 NCF2P19878 526 aaPredicted RBP15.73■□□□□ 0.11
COL6A1-204ENST00000486023 APOBEC1P41238 236 aaKnown RBP15.73■□□□□ 0.11
COL6A1-204ENST00000486023 DIO1P49895 249 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 TXNL4AP83876 142 aaKnown RBP15.73■□□□□ 0.11
COL6A1-204ENST00000486023 RASGEF1BQ0VAM2 473 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 TESK1Q15569 626 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 TSC22D1Q15714 1073 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 AGKQ53H12 422 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 SYT14P1Q58G82 188 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 FAM71CQ8NEG0 241 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 OR52P1PQ8NH57 321 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 GTF2H4Q92759 462 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 CCDC28BQ9BUN5 200 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 OR11A1Q9GZK7 315 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 CACYBPQ9HB71 228 aaKnown RBP15.73■□□□□ 0.11
COL6A1-204ENST00000486023 KLHL13Q9P2N7 655 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 PCDHB14Q9Y5E9 798 aa15.73■□□□□ 0.11
COL6A1-204ENST00000486023 SPIN1Q9Y657 262 aaPredicted RBP15.73■□□□□ 0.11
COL6A1-204ENST00000486023 CLIC1O00299 241 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 DNAJA2O60884 412 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 FESP07332 822 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 NUDT7P0C024 238 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 ZCCHC18P0CG32 403 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 H2AFXP16104 143 aaPredicted RBP15.72■□□□□ 0.11
COL6A1-204ENST00000486023 MVDP53602 400 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 CRISP3P54108 245 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 OR2B6P58173 313 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 PLAURQ03405 335 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 MAPK11Q15759 364 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 MRPL2Q5T653 305 aaKnown RBP15.72■□□□□ 0.11
COL6A1-204ENST00000486023 STAC2Q6ZMT1 411 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 TMPPEQ6ZT21 453 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 MSANTD1Q6ZTZ1 278 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 GRINAQ7Z429 371 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 CXorf67Q86X51 503 aaPredicted RBP15.72■□□□□ 0.11
COL6A1-204ENST00000486023 ADGRG3Q86Y34 549 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 WFDC8Q8IUA0 241 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 SLC43A2Q8N370 569 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 SLC38A5Q8WUX1 472 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 CKAP2Q8WWK9 683 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 OIT3Q8WWZ8 545 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 MAL2Q969L2 176 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 SPDL1Q96EA4 605 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 TMEM19Q96HH6 336 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 MAGEB18Q96M61 343 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 CCDC106Q9BWC9 280 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 PAIP1Q9H074 479 aaKnown RBP15.72■□□□□ 0.11
COL6A1-204ENST00000486023 PLEKHF2Q9H8W4 249 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 VIPAS39Q9H9C1 493 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 EXOSC3Q9NQT5 275 aaKnown RBP15.72■□□□□ 0.11
COL6A1-204ENST00000486023 KLHL9Q9P2J3 617 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 CHRNA9Q9UGM1 479 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 DCTN4Q9UJW0 460 aa15.72■□□□□ 0.11
COL6A1-204ENST00000486023 TMED7-TICAM2A0A0A6YYA0 188 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 A0A1W2PPR1 153 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 CFAP73A6NFT4 308 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 ETV2O00321 342 aaPredicted RBP15.71■□□□□ 0.11
COL6A1-204ENST00000486023 SMAD9O15198 467 aaKnown RBP15.71■□□□□ 0.11
COL6A1-204ENST00000486023 SASH3O75995 380 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 RAF1P04049 648 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 TFPTP0C1Z6 253 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 NID1P14543 1247 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 CD1EP15812 388 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 TACR3P29371 465 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 CSNK2A1P68400 391 aaPredicted RBP15.71■□□□□ 0.11
COL6A1-204ENST00000486023 PAMR1Q6UXH9 720 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 ZNF836Q6ZNA1 936 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 FUNDC1Q8IVP5 155 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 CMIPQ8IY22 773 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 CADM2Q8N3J6 435 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 SLC25A43Q8WUT9 341 aaPredicted RBP15.71■□□□□ 0.11
COL6A1-204ENST00000486023 NINJ1Q92982 152 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 ARL5BQ96KC2 179 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 ZNF300Q96RE9 604 aaPredicted RBP15.71■□□□□ 0.11
COL6A1-204ENST00000486023 ACTR6Q9GZN1 396 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 UBTD1Q9HAC8 227 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 CALML5Q9NZT1 146 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 SLAMF8Q9P0V8 285 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 ZNF232Q9UNY5 417 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 TMED7Q9Y3B3 224 aa15.71■□□□□ 0.11
COL6A1-204ENST00000486023 DEFB108AA8MXU0 73 aa15.7■□□□□ 0.1
COL6A1-204ENST00000486023 C5orf58C9J3I9 102 aa15.7■□□□□ 0.1
COL6A1-204ENST00000486023 SIAH2O43255 324 aa15.7■□□□□ 0.1
COL6A1-204ENST00000486023 ADAP00813 363 aa15.7■□□□□ 0.1
COL6A1-204ENST00000486023 UQCRBP14927 111 aa15.7■□□□□ 0.1
COL6A1-204ENST00000486023 CRYGSP22914 178 aa15.7■□□□□ 0.1
COL6A1-204ENST00000486023 SF3A3Q12874 501 aaKnown RBP eCLIP15.7■□□□□ 0.1
COL6A1-204ENST00000486023 RGNQ15493 299 aa15.7■□□□□ 0.1
COL6A1-204ENST00000486023 LIN52Q52LA3 116 aa15.7■□□□□ 0.1
COL6A1-204ENST00000486023 PAGE3Q5JUK9 113 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms