RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ST6GAL2Q96JF0 529 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 C4orf36Q96KX1 117 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 DEPDC7Q96QD5 511 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 MAP3K3Q99759 626 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 LRRC61Q9BV99 259 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 KCNN2Q9H2S1 579 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 LRRN3Q9H3W5 708 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 LRIT1Q9P2V4 623 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 N6AMT1Q9Y5N5 214 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 THADAQ6YHU6 1953 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 PCDH15Q96QU1 1955 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 A0A0B4J293 547 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 MAGEB4O15481 346 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-217ENST00000466159 MT-ND5P03915 603 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 IFI6P09912 130 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 GSTT2P0CG29 244 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 GSTT2BP0CG30 244 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 CT45A8P0DMV1 189 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 CT45A9P0DMV2 189 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 RNH1P13489 461 aaKnown RBP8.23□□□□□ -1.09
SYNE1-217ENST00000466159 HK1P19367 917 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 MAOAP21397 527 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 GALP22466 123 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 ACVR1BP36896 505 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 CCR5P51681 352 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 PGDP52209 483 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 IFITM2Q01629 132 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 CT45A2Q5DJT8 189 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 LCN1P1Q5VSP4 162 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 FAAH2Q6GMR7 532 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 MZT2AQ6P582 158 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 IL20RBQ6UXL0 311 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 ARL14Q8N4G2 192 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 DEFB119Q8N690 84 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 LSMEM1Q8N8F7 131 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 DTX3Q8N9I9 347 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 OR52E2Q8NGJ4 325 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 OR51L1Q8NGJ5 315 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 OR5M3Q8NGP4 307 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 OR4C3Q8NH37 302 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 OR4K13Q8NH42 304 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 RNF31Q96EP0 1072 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 KLHDC7BQ96G42 594 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 AHCYL2Q96HN2 611 aaKnown RBP8.23□□□□□ -1.09
SYNE1-217ENST00000466159 DMRTB1Q96MA1 342 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 ERMAPQ96PL5 475 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-217ENST00000466159 NDC1Q9BTX1 674 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 TRIM2Q9C040 744 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 GPR27Q9NS67 375 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 ITGB1BP2Q9UKP3 347 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 CLDN16Q9Y5I7 305 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 FAM25AB3EWG3 89 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 FAM25CB3EWG5 89 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 FAM25GB3EWG6 89 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 PLPP2O43688 288 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 CTNSO60931 367 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 ELK1P19419 428 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 MTNR1BP49286 362 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 OR10A3P58181 314 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 FGFBP1Q14512 234 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 TBRG1Q3YBR2 411 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 TRIQKQ629K1 86 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 TMEM53Q6P2H8 277 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 LINC00114Q6XXX2 140 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 PARGQ86W56 976 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 GHDCQ8N2G8 530 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 C19orf18Q8NEA5 215 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 SDR9C7Q8NEX9 313 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 OR5J2Q8NH18 312 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 TP53INP1Q96A56 240 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 TP63Q9H3D4 680 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-217ENST00000466159 ERVMER34-1Q9H9K5 563 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 PRTFDC1Q9NRG1 225 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-217ENST00000466159 WSB2Q9NYS7 404 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-217ENST00000466159 ERVK-19Q9WJR5 959 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 CLCA3PQ9Y6N3 262 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 MPDZO75970 2070 aa8.23□□□□□ -1.09
SYNE1-217ENST00000466159 TMEM131Q92545 1883 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 A0A1B0GVC2 190 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 A0A1W2PPC4 97 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 A6NIN4 97 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 NPIPB9F8W1W9 429 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 HIST1H1CP16403 213 aaKnown RBP8.22□□□□□ -1.09
SYNE1-217ENST00000466159 MYL9P24844 172 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 SLC6A6P31641 620 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 PYCR1P32322 319 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 RBM34P42696 430 aaKnown RBP8.22□□□□□ -1.09
SYNE1-217ENST00000466159 GPR3P46089 330 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 RPS5P46782 204 aaKnown RBP8.22□□□□□ -1.09
SYNE1-217ENST00000466159 GXYLT1Q4G148 440 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 ULK3Q6PHR2 472 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 METAP1DQ6UB28 335 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-217ENST00000466159 VASH1Q7L8A9 365 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-217ENST00000466159 CEACAM19Q7Z692 300 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 SLC7A5P1Q8MH63 180 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 OR13C5Q8NGS8 318 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 C16orf52Q8NHV5 167 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 ABHD4Q8TB40 342 aa8.22□□□□□ -1.09
SYNE1-217ENST00000466159 ENKURQ8TC29 256 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms