RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 GK2Q14410 553 aaPredicted RBP8.4□□□□□ -1.06
COPB1-202ENST00000439561 PON3Q15166 354 aa8.4□□□□□ -1.06
COPB1-202ENST00000439561 DEFB134Q4QY38 66 aa8.4□□□□□ -1.06
COPB1-202ENST00000439561 FAM220AQ7Z4H9 259 aa8.4□□□□□ -1.06
COPB1-202ENST00000439561 OR5M1Q8NGP8 315 aa8.4□□□□□ -1.06
COPB1-202ENST00000439561 BRIX1Q8TDN6 353 aaKnown RBP8.4□□□□□ -1.06
COPB1-202ENST00000439561 OR8D1Q8WZ84 308 aa8.4□□□□□ -1.06
COPB1-202ENST00000439561 VN1R3Q9BXE9 311 aa8.4□□□□□ -1.06
COPB1-202ENST00000439561 C6orf106Q9H6K1 298 aaPredicted RBP8.4□□□□□ -1.06
COPB1-202ENST00000439561 CA10Q9NS85 328 aa8.4□□□□□ -1.06
COPB1-202ENST00000439561 C20orf141Q9NUB4 165 aa8.4□□□□□ -1.06
COPB1-202ENST00000439561 SLC23A2Q9UGH3 650 aa8.4□□□□□ -1.06
COPB1-202ENST00000439561 ACSL5Q9ULC5 683 aa8.4□□□□□ -1.06
COPB1-202ENST00000439561 CAMK2AQ9UQM7 478 aa8.4□□□□□ -1.06
COPB1-202ENST00000439561 SCN3AQ9NY46 2000 aa8.4□□□□□ -1.06
COPB1-202ENST00000439561 RPS10-NUDT3A0A1W2PQS6 291 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 TRAPPC13A5PLN9 417 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 TBC1D3BA6NDS4 549 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 TGM5O43548 720 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 RAD1O60671 282 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 PPM1BO75688 479 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 ATP1B1P05026 303 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 ADRB1P08588 477 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 EPXP11678 715 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 HIST1H1TP22492 207 aaPredicted RBP8.4□□□□□ -1.07
COPB1-202ENST00000439561 BTCP35070 178 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 PSMD4P55036 377 aaKnown RBP8.4□□□□□ -1.07
COPB1-202ENST00000439561 NTHL1P78549 312 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 MELKQ14680 651 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 TRAM1Q15629 374 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 SLC36A2Q495M3 483 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 SCGB2B2Q4G0G5 96 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 GSG1LQ6UXU4 331 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 CD300LDQ6UXZ3 194 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 DPPA4Q7L190 304 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 CPXM2Q8N436 756 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 KREMEN2Q8NCW0 462 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 DNAAF1Q8NEP3 725 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 OR10G6Q8NH81 332 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 CNOT9Q92600 299 aaKnown RBP8.4□□□□□ -1.07
COPB1-202ENST00000439561 DIO2Q92813 273 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 NKD1Q969G9 470 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 SOSTQ9BQB4 213 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 IL21Q9HBE4 155 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 POT1Q9NUX5 634 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 IL20Q9NYY1 176 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 ACAD8Q9UKU7 415 aa8.4□□□□□ -1.07
COPB1-202ENST00000439561 ZNF443Q9Y2A4 671 aaPredicted RBP8.4□□□□□ -1.07
COPB1-202ENST00000439561 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.39□□□□□ -1.07
COPB1-202ENST00000439561 OR5K3A6NET4 321 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 GRXCR1A8MXD5 290 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 DISC1C4P0D8 188 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 KRBOX1C9JBD0 128 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 SDC3O75056 442 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 RBBP9O75884 186 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 ECDO95905 644 aaPredicted RBP8.39□□□□□ -1.07
COPB1-202ENST00000439561 HLA-DQA2P01906 255 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 ICAM2P13598 275 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 MNDAP41218 407 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 RAP2BP61225 183 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 TAF13Q15543 124 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 NNATQ16517 81 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 DECR1Q16698 335 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 LINC00303Q3SY05 128 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 LIN54Q6MZP7 749 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 POMZP3Q6PJE2 187 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 ZNF793Q6ZN11 406 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 TNFRSF13CQ96RJ3 184 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 TSNAXQ99598 290 aaKnown RBP8.39□□□□□ -1.07
COPB1-202ENST00000439561 NKX3-1Q99801 234 aaPredicted RBP8.39□□□□□ -1.07
COPB1-202ENST00000439561 ACTRT3Q9BYD9 372 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 PCBD2Q9H0N5 130 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 HEXA-AS1Q9H8Q6 139 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 LIN7BQ9HAP6 207 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 RNF186Q9NXI6 227 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 ABRACLQ9P1F3 81 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 MYEF2Q9P2K5 600 aaKnown RBP8.39□□□□□ -1.07
COPB1-202ENST00000439561 EPPINO95925 133 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 MAKP20794 623 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 ZP3P21754 424 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 DDX6P26196 483 aaKnown RBP eCLIP8.39□□□□□ -1.072e-6■■■□□ 15.8
COPB1-202ENST00000439561 GAS1P54826 345 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 NRG3P56975 720 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 MC2RQ01718 297 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 DUSP2Q05923 314 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 RAB33AQ14088 237 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 OR1Q1Q15612 314 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 EIPR1Q53HC9 387 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 MRPL2Q5T653 305 aaKnown RBP8.39□□□□□ -1.07
COPB1-202ENST00000439561 TMEM88Q6PEY1 159 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 THSD4Q6ZMP0 1018 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 TMUB2Q71RG4 321 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 TMEFF1Q8IYR6 380 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 ZNF676Q8N7Q3 588 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 OR2L2Q8NH16 312 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 LRIG1Q96JA1 1093 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 PTCHD1Q96NR3 888 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 OR1F2PQ96R84 312 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 LMAN2LQ9H0V9 348 aa8.39□□□□□ -1.07
COPB1-202ENST00000439561 MED17Q9NVC6 651 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms