RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 PRAMEF8Q5VWM4 474 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 PRAMEF7Q5VXH5 474 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 DND1Q8IYX4 353 aaKnown RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 SUMF2Q8NBJ7 301 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 MFSD9Q8NBP5 474 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 C7orf26Q96N11 449 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 BARD1Q99728 777 aaKnown RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 TP63Q9H3D4 680 aaPredicted RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 CLMPQ9H6B4 373 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 LAMP5Q9UJQ1 280 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 MAST2Q6P0Q8 1798 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 TRGV5A0A0B4J1U4 118 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 TMEM127O75204 238 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 SLC43A1O75387 559 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 JRKO75564 520 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 SNRNP70P08621 437 aaKnown RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 RAP2AP10114 183 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 IMPDH1P20839 514 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 BMP5P22003 454 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 MSX2P35548 267 aaPredicted RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 CTSCP53634 463 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 FZD2Q14332 565 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 TMEM107Q6UX40 140 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 MEX3BQ6ZN04 569 aaKnown RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 CFAP77Q6ZQR2 320 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 GOLGA7Q7Z5G4 137 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 MMP21Q8N119 569 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 FITM2Q8N6M3 262 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 HBEGFQ99075 208 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 TMEM121BQ9BXQ6 578 aaPredicted RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 ADAM19Q9H013 955 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 SLC25A18Q9H1K4 315 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 TCEAL2Q9H3H9 227 aaPredicted RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 ZFP57Q9NU63 452 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 TBC1D29Q9UFV1 150 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 PCTPQ9UKL6 214 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 PDE4DIPQ5VU43 2346 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 A0A087WZY1 265 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 PDYNP01213 254 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 GSTM3P21266 225 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 TLE1Q04724 770 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 FASTKD3Q14CZ7 662 aaKnown RBP6.81□□□□□ -1.32
SCN9A-202ENST00000409435 TSTQ16762 297 aaKnown RBP6.81□□□□□ -1.32
SCN9A-202ENST00000409435 HIST2H3PS2Q5TEC6 136 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 SPRED1Q7Z699 444 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 SLC39A13Q96H72 371 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 RANBP9Q96S59 729 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 NUDT16L1Q9BRJ7 211 aaKnown RBP6.81□□□□□ -1.32
SCN9A-202ENST00000409435 FN3KQ9H479 309 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 BEX1Q9HBH7 125 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 POLE4Q9NR33 117 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 TXNL4BQ9NX01 149 aaKnown RBP6.81□□□□□ -1.32
SCN9A-202ENST00000409435 TEX10Q9NXF1 929 aaPredicted RBP6.81□□□□□ -1.32
SCN9A-202ENST00000409435 REV1Q9UBZ9 1251 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 TCRBV9S1A1TA0A576 114 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 SFTPBP07988 381 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 ANXA8P13928 327 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 HERV-K104P61576 105 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 C9orf135Q5VTT2 229 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 UBE2UQ5VVX9 321 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 TRIM46Q7Z4K8 759 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 IQCF1Q8N6M8 205 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.81□□□□□ -1.32
SCN9A-202ENST00000409435 CSNK2A3Q8NEV1 391 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 OR5AK3PQ8NH89 298 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 CRYGNQ8WXF5 182 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 SNAPC3Q92966 411 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 COL21A1Q96P44 957 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 CDK15Q96Q40 435 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 WDR83Q9BRX9 315 aaKnown RBP6.81□□□□□ -1.32
SCN9A-202ENST00000409435 OSBPL7Q9BZF2 842 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 OBP2BQ9NPH6 170 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 DUSP13Q9UII6 198 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 HSPB2A8KAH6 182 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 PSMD9O00233 223 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 MANBAO00462 879 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 GPR171O14626 319 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 DFFBO76075 338 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 F7P08709 466 aaPredicted RBP6.81□□□□□ -1.32
SCN9A-202ENST00000409435 ADORA3P0DMS8 318 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 BCKDHAP12694 445 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 CFL1P23528 166 aaKnown RBP6.81□□□□□ -1.32
SCN9A-202ENST00000409435 CD1CP29017 333 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 ACTG1P63261 375 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 HSPB2Q16082 182 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 FAM58AQ8N1B3 248 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 PATE1Q8WXA2 126 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 C8orf44Q96CB5 159 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 KCNIP2Q9NS61 270 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 LRRC10BA6NIK2 292 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 HOXB9P17482 250 aaPredicted RBP6.81□□□□□ -1.32
SCN9A-202ENST00000409435 POLR2JP52435 117 aaKnown RBP6.81□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF136P52737 540 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 FXYD6P3P58550 94 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 C9orf152Q5JTZ5 239 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF367Q7RTV3 350 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF596Q8TC21 504 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 TM9SF2Q99805 663 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 NUDT9Q9BW91 350 aa6.81□□□□□ -1.32
SCN9A-202ENST00000409435 LOC105369274A0A096LPK9 316 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms