RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ISG20L2Q9H9L3 353 aaKnown RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 LAMA2P24043 3122 aaKnown RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 C13orf42A0A1B0GVH6 325 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 FLRT2O43155 660 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 CYTIPO60759 359 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 OR6A2O95222 327 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 ELK1P19419 428 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 RFX2P48378 723 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 CRYBA2P53672 197 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 PEA15Q15121 130 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 AADACL4Q5VUY2 407 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 OTPQ5XKR4 325 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 BEND4Q6ZU67 534 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 TMEM150AQ86TG1 271 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 C7orf61Q8IZ16 206 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 OR4M1Q8NGD0 313 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 ACOT11Q8WXI4 607 aaPredicted RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 HSPA12BQ96MM6 686 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 FTSJ1Q9UET6 329 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 SLC27A6Q9Y2P4 619 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 MED31Q9Y3C7 131 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 TRBV2A0A0J9YWF9 115 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 CACNB4O00305 520 aaPredicted RBP11.12□□□□□ -0.63
HMGB1-206ENST00000405805 ACSM4P0C7M7 580 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 TYRP1P17643 537 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 RAB40BQ12829 278 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 FBXO15Q8NCQ5 510 aaPredicted RBP11.12□□□□□ -0.63
HMGB1-206ENST00000405805 SDR9C7Q8NEX9 313 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 ADAMTS19Q8TE59 1207 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 NEURL3Q96EH8 262 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 DPYSL5Q9BPU6 564 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 NKX6-2Q9C056 277 aaPredicted RBP11.12□□□□□ -0.63
HMGB1-206ENST00000405805 STARD5Q9NSY2 213 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 SEMA4GQ9NTN9 838 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 ZNF223Q9UK11 482 aaPredicted RBP11.12□□□□□ -0.63
HMGB1-206ENST00000405805 A3GALT2U3KPV4 340 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 B4GALT2O60909 372 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 TGM6O95932 706 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 AHCYP23526 432 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 GPR50Q13585 617 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 ZNF79Q15937 498 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 TMEM31Q5JXX7 168 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 LYPD4Q6UWN0 246 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 SVBPQ8N300 66 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 RELL2Q8NC24 303 aaPredicted RBP11.12□□□□□ -0.63
HMGB1-206ENST00000405805 OR56A1Q8NGH5 318 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 OR5W2Q8NH69 310 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 PRRC1Q96M27 445 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 LINC00052Q96N35 136 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 PIGQQ9BRB3 760 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 OR52D1Q9H346 318 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 TCF7L1Q9HCS4 588 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 SRA1Q9HD15 236 aaKnown RBP11.12□□□□□ -0.63
HMGB1-206ENST00000405805 ACOXLQ9NUZ1 547 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 CALML5Q9NZT1 146 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 KLHL42Q9P2K6 505 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 KLHL21Q9UJP4 597 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 KIAA0355O15063 1070 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 SIGLEC5O15389 551 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 HEXBP07686 556 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 HOXB3P14651 431 aaPredicted RBP11.12□□□□□ -0.63
HMGB1-206ENST00000405805 AK4P27144 223 aaPredicted RBP11.12□□□□□ -0.63
HMGB1-206ENST00000405805 SIGLEC14Q08ET2 396 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 PLA2G7Q13093 441 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 ACSM3Q53FZ2 586 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 YIF1BQ5BJH7 314 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 ZNF704Q6ZNC4 412 aaPredicted RBP11.12□□□□□ -0.63
HMGB1-206ENST00000405805 KIAA1958Q8N8K9 716 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 NAXEQ8NCW5 288 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 OR13C2Q8NGS9 318 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 FOXN4Q96NZ1 517 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 OR7D2Q96RA2 312 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 LGR4Q9BXB1 951 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 MFFQ9GZY8 342 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 RGCCQ9H4X1 137 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 POLMQ9NP87 494 aaPredicted RBP11.12□□□□□ -0.63
HMGB1-206ENST00000405805 FAM86C1Q9NVL1 165 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 DIMT1Q9UNQ2 313 aaKnown RBP11.12□□□□□ -0.63
HMGB1-206ENST00000405805 CHST2Q9Y4C5 530 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 SCN2AQ99250 2005 aa11.12□□□□□ -0.63
HMGB1-206ENST00000405805 RPS10-NUDT3A0A1W2PQS6 291 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 EMC8O43402 210 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 PRKNO60260 465 aaPredicted RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 LATS1O95835 1130 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 CHRM4P08173 479 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 APEHP13798 732 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 RPS10P46783 165 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 PITPNBP48739 271 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 AIMP2Q13155 320 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 ZNHIT3Q15649 155 aaPredicted RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 FAM189A2Q15884 450 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 CLEC9AQ6UXN8 241 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 ZNF574Q6ZN55 896 aaPredicted RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 ARL14Q8N4G2 192 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 OR14K1Q8NGZ2 314 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 AMDHD1Q96NU7 426 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 DDOQ99489 341 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 POLDIP3Q9BY77 421 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 AKAP7Q9P0M2 348 aaPredicted RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 DUXAA6NLW8 204 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms