RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 BLKP51451 505 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 GALEQ14376 348 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 ZFP69Q49AA0 526 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 KIRREL2Q6UWL6 708 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 LRRC17Q8N6Y2 441 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 GDPD1Q8N9F7 314 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 OR4C3Q8NH37 302 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 PMM1Q92871 262 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 COQ7Q99807 217 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 ADGRL4Q9HBW9 690 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 PRTFDC1Q9NRG1 225 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 ASB6Q9NWX5 421 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 FBXL21Q9UKT6 434 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 MAOBP27338 520 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 PPP3R1P63098 170 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 E2F1Q01094 437 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 ARL14Q8N4G2 192 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 OR5W2Q8NH69 310 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 C16orf52Q8NHV5 167 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 MMABQ96EY8 250 aaPredicted RBP17.82■□□□□ 0.44
COL9A3-201ENST00000343916 ZNF576Q9H609 170 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 NPAP1Q9NZP6 1156 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 ZMIZ1Q9ULJ6 1067 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 POLHQ9Y253 713 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 CLCA3PQ9Y6N3 262 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 CACNA1IQ9P0X4 2223 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 CTNSO60931 367 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 SBK2P0C263 348 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 CT45A8P0DMV1 189 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 CT45A9P0DMV2 189 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 CHRNB1P11230 501 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 ZNF3P17036 446 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 HCCSP53701 268 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 GXYLT1Q4G148 440 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 CT45A2Q5DJT8 189 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 SSX6Q7RTT6 188 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 GRAMD2AQ8IUY3 354 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 GHDCQ8N2G8 530 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 RFLNBQ8N5W9 214 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 C17orf47Q8NEP4 570 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 OR51L1Q8NGJ5 315 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 ST6GAL2Q96JF0 529 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 C4orf36Q96KX1 117 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 DGAT2Q96PD7 388 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 LMF1Q96S06 567 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 TRIM36Q9NQ86 728 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 PCDH15Q96QU1 1955 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 FAM172BPA6NC97 362 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 RGS9O75916 674 aaPredicted RBP17.81■□□□□ 0.44
COL9A3-201ENST00000343916 WNT1P04628 370 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 SLC2A5P22732 501 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 GFERP55789 205 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 OR12D2P58182 307 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 IL18Q14116 193 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.81■□□□□ 0.442e-6■■□□□ 13.7
COL9A3-201ENST00000343916 RTL4Q6ZR62 310 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 RAB43Q86YS6 212 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 SDR9C7Q8NEX9 313 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 ERMAPQ96PL5 475 aaPredicted RBP17.81■□□□□ 0.44
COL9A3-201ENST00000343916 TTYH2Q9BSA4 534 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 TRIM2Q9C040 744 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 THADAQ6YHU6 1953 aa17.81■□□□□ 0.44
COL9A3-201ENST00000343916 J3QLW9 94 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 MAGEB4O15481 346 aaPredicted RBP17.8■□□□□ 0.44
COL9A3-201ENST00000343916 PLA2G10O15496 165 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 IFI6P09912 130 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 PEPDP12955 493 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 ZNF19P17023 458 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 GPR3P46089 330 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 SLC3A1Q07837 685 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 ASAH1Q13510 395 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 FGFBP1Q14512 234 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 LSMEM1Q8N8F7 131 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 OR52E2Q8NGJ4 325 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 OR5M3Q8NGP4 307 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 OR4K13Q8NH42 304 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 SMPDL3BQ92485 455 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 Q9N2J8 555 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 B3GAT2Q9NPZ5 323 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 OR10H1Q9Y4A9 318 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 SEC16AO15027 2179 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 IFNA16P05015 189 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 SHC1P29353 583 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 CAPZBP47756 277 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 BDH1Q02338 343 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 ZNF85Q03923 595 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 TBRG1Q3YBR2 411 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 IDNKQ5T6J7 187 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 Q8N402 240 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 LMX1AQ8TE12 382 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 NDC1Q9BTX1 674 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 SLC22A4Q9H015 551 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 PPP1R3EQ9H7J1 279 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 PLSCR3Q9NRY6 295 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 MRPS33Q9Y291 106 aaKnown RBP17.8■□□□□ 0.44
COL9A3-201ENST00000343916 ADAM18Q9Y3Q7 739 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 GRIP1Q9Y3R0 1128 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 MAU2Q9Y6X3 613 aa17.8■□□□□ 0.44
COL9A3-201ENST00000343916 SRPX2O60687 465 aaPredicted RBP17.79■□□□□ 0.44
COL9A3-201ENST00000343916 SLC2A2P11168 524 aaPredicted RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms