RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 RNF215Q9Y6U7 377 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 FAM155AB1AL88 458 aaPredicted RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 HCRTR2O43614 444 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 MTNR1BP49286 362 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 RAB4BP61018 213 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 PSPHP78330 225 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 CTSL3PQ5NE16 218 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 TIGD3Q6B0B8 471 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 FIP1L1Q6UN15 594 aaKnown RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 MFSD6LQ8IWD5 586 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 PGBD5Q8N414 524 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 METTL27Q8N6F8 245 aaPredicted RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 SFXN5Q8TD22 340 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 RNF141Q8WVD5 230 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 HOXD1Q9GZZ0 328 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 GPATCH2Q9NW75 528 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 TAS2R16Q9NYV7 291 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 LAMB2P55268 1798 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 COL5A3P25940 1745 aaPredicted RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 GABRR3A8MPY1 467 aa10.77□□□□□ -0.68
VPS39-201ENST00000318006 MAN2B1O00754 1011 aa10.77□□□□□ -0.68
VPS39-201ENST00000318006 GP2P55259 537 aaKnown RBP10.77□□□□□ -0.68
VPS39-201ENST00000318006 BCL2A1Q16548 175 aa10.77□□□□□ -0.68
VPS39-201ENST00000318006 TMEM164Q5U3C3 297 aa10.77□□□□□ -0.68
VPS39-201ENST00000318006 FIGNL1Q6PIW4 674 aa10.77□□□□□ -0.68
VPS39-201ENST00000318006 NINJ1Q92982 152 aa10.77□□□□□ -0.68
VPS39-201ENST00000318006 PGAM5Q96HS1 289 aa10.77□□□□□ -0.68
VPS39-201ENST00000318006 RADILQ96JH8 1075 aa10.77□□□□□ -0.68
VPS39-201ENST00000318006 C10orf90Q96M02 699 aa10.77□□□□□ -0.68
VPS39-201ENST00000318006 CDCA3Q99618 268 aaPredicted RBP10.77□□□□□ -0.68
VPS39-201ENST00000318006 NEURL2Q9BR09 285 aa10.77□□□□□ -0.68
VPS39-201ENST00000318006 UFSP2Q9NUQ7 469 aa10.77□□□□□ -0.68
VPS39-201ENST00000318006 MARCH5Q9NX47 278 aa10.77□□□□□ -0.68
VPS39-201ENST00000318006 C19orf25Q9UFG5 118 aaPredicted RBP10.77□□□□□ -0.68
VPS39-201ENST00000318006 SCML1Q9UN30 329 aa10.77□□□□□ -0.68
VPS39-201ENST00000318006 SLC7A11Q9UPY5 501 aa10.77□□□□□ -0.68
VPS39-201ENST00000318006 FAM221BA6H8Z2 402 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 ADAM10O14672 748 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 APBB3O95704 486 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 ZDHHC11BP0C7U3 371 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 LIPCP11150 499 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 SLC35A2P78381 396 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 DUSP7Q16829 419 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 ZNF542PQ5EBM4 170 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 SLC6A19Q695T7 634 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 LCN10Q6JVE6 187 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 MRPL41Q8IXM3 137 aaKnown RBP10.77□□□□□ -0.69
VPS39-201ENST00000318006 TMEM156Q8N614 296 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 NEIL2Q969S2 332 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 MARC2Q969Z3 335 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 DCDC2BA2VCK2 349 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 CDHR4A6H8M9 788 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 CTSCP53634 463 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 CTXN1P60606 82 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 CCINQ13939 588 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 FCRLBQ6BAA4 426 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 FCRLAQ7L513 359 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 SIAH3Q8IW03 269 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 OR5M3Q8NGP4 307 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 TMEM239Q8WW34 195 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 ARPC5LQ9BPX5 153 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 DIMT1Q9UNQ2 313 aaKnown RBP10.77□□□□□ -0.69
VPS39-201ENST00000318006 TMEM82A0PJX8 343 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 A8MVJ9 347 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 SHOXO15266 292 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 AOAHP28039 575 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 SERPINF1P36955 418 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 SLC1A3P43003 542 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 HTR3AP46098 478 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 P2RY14Q15391 338 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 C1orf94Q6P1W5 598 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 FIGLAQ6QHK4 219 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 FAM83HQ6ZRV2 1179 aaPredicted RBP10.77□□□□□ -0.69
VPS39-201ENST00000318006 FUNDC1Q8IVP5 155 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 DYNC2LI1Q8TCX1 351 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 CRB3Q9BUF7 120 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 SLC19A3Q9BZV2 496 aa10.77□□□□□ -0.69
VPS39-201ENST00000318006 NKX6-2Q9C056 277 aaPredicted RBP10.77□□□□□ -0.69
VPS39-201ENST00000318006 A0A1B0GTW7 788 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 I6L893 689 aaPredicted RBP10.76□□□□□ -0.69
VPS39-201ENST00000318006 KIAA0355O15063 1070 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 GPRIN2O60269 458 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 CSO75390 466 aaKnown RBP10.76□□□□□ -0.69
VPS39-201ENST00000318006 SEMA4FO95754 770 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 SNRPBP14678 240 aaKnown RBP10.76□□□□□ -0.69
VPS39-201ENST00000318006 AHRP35869 848 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 PSMB10P40306 273 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 VEGFCP49767 419 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 PRPS1P60891 318 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 SIM1P81133 766 aaPredicted RBP10.76□□□□□ -0.69
VPS39-201ENST00000318006 TLE3Q04726 772 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 LEXMQ3ZCV2 418 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 TBPL2Q6SJ96 375 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 LCTLQ6UWM7 567 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 LILRB2Q8N423 598 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 BPIFB2Q8N4F0 458 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 OR4Q3Q8NH05 313 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 ASB11Q8WXH4 323 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 DUS3LQ96G46 650 aaKnown RBP10.76□□□□□ -0.69
VPS39-201ENST00000318006 TSPAN10Q9H1Z9 355 aaPredicted RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms