RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 D6RAR5 112 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 AIPO00170 330 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 IMPA2O14732 288 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 NARSO43776 548 aaKnown RBP13.31□□□□□ -0.28
SDC1-201ENST00000254351 POP7O75817 140 aaKnown RBP13.31□□□□□ -0.28
SDC1-201ENST00000254351 MPIP34949 423 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 PDX1P52945 283 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 PCBP4P57723 403 aaKnown RBP13.31□□□□□ -0.28
SDC1-201ENST00000254351 STX4Q12846 297 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 GXYLT1Q4G148 440 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 OTPQ5XKR4 325 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 KIAA1211LQ6NV74 962 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 FAM83HQ6ZRV2 1179 aaPredicted RBP13.31□□□□□ -0.28
SDC1-201ENST00000254351 OR2A12Q8NGT7 310 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 SCARB1Q8WTV0 552 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 SCLYQ96I15 445 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 TEAD3Q99594 435 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 SLC39A1Q9NY26 324 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 ZNF230Q9UIE0 474 aaPredicted RBP13.31□□□□□ -0.28
SDC1-201ENST00000254351 LSM7Q9UK45 103 aaKnown RBP13.31□□□□□ -0.28
SDC1-201ENST00000254351 CA5BQ9Y2D0 317 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 LOC100509620A0A075B734 347 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 A0A1B0GVT2 93 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 H7C2Y5 167 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 TMEM189-UBE2V1I3L0A0 370 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 MAKP20794 623 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 TMEM69Q5SWH9 247 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 ZNF783Q6ZMS7 281 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 BPIFCQ8NFQ6 507 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 SMIM4Q8WVI0 70 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 MFFQ9GZY8 342 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 SLC6A15Q9H2J7 730 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 IL20Q9NYY1 176 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 ACTR10Q9NZ32 417 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 ING1Q9UK53 422 aaPredicted RBP13.3□□□□□ -0.28
SDC1-201ENST00000254351 ICKQ9UPZ9 632 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 EXOGQ9Y2C4 368 aaKnown RBP13.3□□□□□ -0.28
SDC1-201ENST00000254351 PRELID3BQ9Y3B1 194 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 TRBV2A0A0J9YWF9 115 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 STARP49675 285 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 PLA2G7Q13093 441 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 C4orf46Q504U0 113 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 PDSS1Q5T2R2 415 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 LHX8Q68G74 356 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 OVCH2Q7RTZ1 564 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 TMED4Q7Z7H5 227 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 TMEM185AQ8NFB2 350 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 OR52L1Q8NGH7 329 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 DIO2Q92813 273 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 ACTR6Q9GZN1 396 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 TMEM185BQ9H7F4 350 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 NOX4Q9NPH5 578 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 SLC25A13Q9UJS0 675 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 CACNA1IQ9P0X4 2223 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 GREM1O60565 184 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 PPP1R3DO95685 299 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 FGF2P09038 288 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 GABRA1P14867 456 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 IL9P15248 144 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 UGT2B7P16662 529 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 C4BPBP20851 252 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 POLR2LP62875 67 aaKnown RBP13.3□□□□□ -0.28
SDC1-201ENST00000254351 PRR5P85299 388 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 ID2Q02363 134 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 BAMBIQ13145 260 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 SEZ6L2Q6UXD5 910 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 SUN3Q8TAQ9 357 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 CASD1Q96PB1 797 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 UQCC2Q9BRT2 126 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 POLMQ9NP87 494 aaPredicted RBP13.3□□□□□ -0.28
SDC1-201ENST00000254351 MED11Q9P086 117 aa13.3□□□□□ -0.28
SDC1-201ENST00000254351 ZNF346Q9UL40 294 aaKnown RBP13.3□□□□□ -0.28
SDC1-201ENST00000254351 APEHP13798 732 aaKnown RBP13.29□□□□□ -0.28
SDC1-201ENST00000254351 EDNRAP25101 427 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 MAT2AP31153 395 aaKnown RBP13.29□□□□□ -0.28
SDC1-201ENST00000254351 HENMT1Q5T8I9 393 aaKnown RBP13.29□□□□□ -0.28
SDC1-201ENST00000254351 ZNF660Q6AZW8 331 aaPredicted RBP13.29□□□□□ -0.28
SDC1-201ENST00000254351 NUDT13Q86X67 352 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 SLC16A11Q8NCK7 471 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 SNX33Q8WV41 574 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 FCAMRQ8WWV6 532 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 ACOT11Q8WXI4 607 aaPredicted RBP13.29□□□□□ -0.28
SDC1-201ENST00000254351 PGLYRP3Q96LB9 341 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 ZNF75AQ96N20 296 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 OR7D2Q96RA2 312 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 CMSS1Q9BQ75 279 aaKnown RBP13.29□□□□□ -0.28
SDC1-201ENST00000254351 NKX6-2Q9C056 277 aaPredicted RBP13.29□□□□□ -0.28
SDC1-201ENST00000254351 CHST6Q9GZX3 395 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 ATG4BQ9Y4P1 393 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 STX11O75558 287 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 NFATC1O95644 943 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 ATP1B1P05026 303 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 VSIG10L2P0DP72 767 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 NTSP30990 170 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 PRLHRP49683 370 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 KHKP50053 298 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 TNFRSF17Q02223 184 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 ZNF85Q03923 595 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 GLDNQ6ZMI3 551 aaPredicted RBP13.29□□□□□ -0.28
SDC1-201ENST00000254351 LRRC56Q8IYG6 542 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms