RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SC5DO75845 299 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SMIM17P0DL12 118 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 DPP4P27487 766 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 LUMP51884 338 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 UFM1P61960 85 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 DAG1Q14118 895 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SLC41A2Q96JW4 573 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SLC25A31Q9H0C2 315 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 ZNFX1Q9P2E3 1918 aaKnown RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SCN2AQ99250 2005 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 ARHGEF15O94989 841 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 UNGP13051 313 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 ETFAP13804 333 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 BPIP17213 487 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 GJA5P36382 358 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SOX3P41225 446 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 EIF3IQ13347 325 aaKnown RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 GINS1Q14691 196 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 CLLU1OSQ5K130 101 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 NAA40Q86UY6 237 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SAMD12Q8N8I0 201 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 OR52R1Q8NGF1 315 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 PRR7Q8TB68 274 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 IL17FQ96PD4 163 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 NPY6RQ99463 290 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 NTMT1Q9BV86 223 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 HDAC8Q9BY41 377 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 NMUR2Q9GZQ4 415 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 MYEF2Q9P2K5 600 aaKnown RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 KIF25Q9UIL4 384 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 ASCC3Q8N3C0 2202 aaKnown RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 TEX51A0A1B0GUA7 166 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 CLCA1A8K7I4 914 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SUSD5O60279 629 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 ARR3P36575 388 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 OR1E2P47887 323 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 OR1D5P58170 312 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 AKR1C1Q04828 323 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 LTB4RQ15722 352 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SLC5A9Q2M3M2 681 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 LDLRAD1Q5T700 205 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 OR8J3Q8NGG0 315 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 BARD1Q99728 777 aaKnown RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 PINK1Q9BXM7 581 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 MOV10Q9HCE1 1003 aaKnown RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 PCDHA9Q9Y5H5 950 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 USP54Q70EL1 1684 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 MEIOCA2RUB1 952 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SRRM3A6NNA2 597 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 OR8U9P0C7N5 309 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 MAGP20916 626 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 CST5P28325 142 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 PRKXP51817 358 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 BIDP55957 195 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 CAMK2BQ13554 666 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 MBTPS1Q14703 1052 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SHHQ15465 462 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 LPCAT4Q643R3 524 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 UMODL1-AS1Q8N2C9 162 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 CMASQ8NFW8 434 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 OR6Q1Q8NGQ2 317 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 ASB9Q96DX5 294 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SORCS2Q96PQ0 1159 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 KATNB1Q9BVA0 655 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 OSBPL7Q9BZF2 842 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 RAB1BQ9H0U4 201 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 RIMS4Q9H426 269 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 XPNPEP1Q9NQW7 623 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 C1GALT1Q9NS00 363 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 VSX1Q9NZR4 365 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 RPH3ALQ9UNE2 315 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 RASD1Q9Y272 281 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 MMACHCQ9Y4U1 282 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 IGKV6D-41A0A0C4DH26 115 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 FAM149AA5PLN7 773 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 CHEK1O14757 476 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 LDB3O75112 727 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 AGFG2O95081 481 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 PBX2P40425 430 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 EIF2DP41214 584 aaKnown RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 CLDN17P56750 224 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 FAM217AQ8IXS0 508 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 ARFGAP1Q8N6T3 406 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 DTX3Q8N9I9 347 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SLAMF9Q96A28 289 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SAT2Q96F10 170 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 APMAPQ9HDC9 416 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SLCO1B3Q9NPD5 702 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 RHCGQ9UBD6 479 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 PRELID1Q9Y255 219 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 AURKAO14965 403 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 XPNPEP2O43895 674 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 AHSGP02765 367 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 COX6B1P14854 86 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 KDELR2P33947 212 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 SLC22A6Q4U2R8 563 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 PRAMEF20Q5VT98 475 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 NADSYN1Q6IA69 706 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 SPNS3Q6ZMD2 512 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms