RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 BRIX1Q8TDN6 353 aaKnown RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 NAA11Q9BSU3 229 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 LMF2Q9BU23 707 aaKnown RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 MRI1Q9BV20 369 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 BTBD2Q9BX70 525 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 AMBRA1Q9C0C7 1298 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 RANGRFQ9HD47 186 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 PRDM9Q9NQV7 894 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 MAN2C1Q9NTJ4 1040 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 UBE2J1Q9Y385 318 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 A6NLC8 198 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 F5H5K5 113 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 SSX5O60225 188 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF217O75362 1048 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 DRD1P21728 446 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 GABRA5P31644 462 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 DUSP7Q16829 419 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 OR5M10Q6IEU7 315 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 TMPPEQ6ZT21 453 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 IL22RA1Q8N6P7 574 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF709Q8N972 641 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 SNIP1Q8TAD8 396 aaKnown RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 HAVCR2Q8TDQ0 301 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 NEURL3Q96EH8 262 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 TOX2Q96NM4 488 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 GLIPR2Q9H4G4 154 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 WASF3Q9UPY6 502 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 FXYD1O00168 92 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 LIPCP11150 499 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 UGT2B7P16662 529 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 DUSP3P51452 185 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 RPS25P62851 125 aaKnown RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 CXADRP78310 365 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 GPR50Q13585 617 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 LTB4RQ15722 352 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 OR7E24Q6IFN5 339 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 SCGB1C1Q8TD33 95 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 PRR14Q9BWN1 585 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 RGCCQ9H4X1 137 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 TXNL4BQ9NX01 149 aaKnown RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 SIDT1Q9NXL6 827 aaKnown RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 KCNS2Q9ULS6 477 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 CIB4A0PJX0 185 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 ACOD1A6NK06 481 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 AQP9O43315 295 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 MRPS10P82664 201 aaKnown RBP13.08□□□□□ -0.32
CPSF1-212ENST00000616140 RHEBQ15382 184 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 PLK5Q496M5 336 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 KDM4DQ6B0I6 523 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 C3orf33Q6P1S2 294 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 RSPO2Q6UXX9 243 aaPredicted RBP13.08□□□□□ -0.32
CPSF1-212ENST00000616140 FAM83FQ8NEG4 500 aaPredicted RBP13.08□□□□□ -0.32
CPSF1-212ENST00000616140 NLGN4YQ8NFZ3 816 aaPredicted RBP13.08□□□□□ -0.32
CPSF1-212ENST00000616140 PHB2Q99623 299 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 SUSD2Q9UGT4 822 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 HHLA2Q9UM44 414 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 PPT2Q9UMR5 302 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 TMEM202A6NGA9 273 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 F5H5P2 479 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 ELAVL4P26378 380 aaKnown RBP13.08□□□□□ -0.32
CPSF1-212ENST00000616140 GAB1Q13480 694 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 RSU1Q15404 277 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 FAM78AQ5JUQ0 283 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 FCRLAQ7L513 359 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 TOE1Q96GM8 510 aaKnown RBP13.08□□□□□ -0.32
CPSF1-212ENST00000616140 INPP5EQ9NRR6 644 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 INIPQ9NRY2 104 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 ICKQ9UPZ9 632 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 RPH3AQ9Y2J0 694 aaPredicted RBP13.08□□□□□ -0.32
CPSF1-212ENST00000616140 A0A0A6YYH2 397 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 A6NJ64 397 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 CRTAPO75718 401 aaPredicted RBP13.08□□□□□ -0.32
CPSF1-212ENST00000616140 SCG5P05408 212 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 OR8G3PP0DMU2 310 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 SSTR2P30874 369 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 RPL34P49207 117 aaKnown RBP13.08□□□□□ -0.32
CPSF1-212ENST00000616140 DLX5P56178 289 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 TDGQ13569 410 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 C3orf38Q5JPI3 329 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 FAM26DQ5JW98 314 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 Q6ZNX1 250 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 DDIT4LQ96D03 193 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 UBQLN4Q9NRR5 601 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 ABRACLQ9P1F3 81 aa13.08□□□□□ -0.32
CPSF1-212ENST00000616140 B3GALT4O96024 378 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 OPN1LWP04000 364 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 SNRPBP14678 240 aaKnown RBP13.07□□□□□ -0.32
CPSF1-212ENST00000616140 ARSBP15848 533 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 HLA-DMAP28067 261 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 RIPPLY1Q0D2K3 151 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 TMEM31Q5JXX7 168 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 FAM69AQ5T7M9 428 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 TBC1D20Q96BZ9 403 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 OR5B2Q96R09 309 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 KATNB1Q9BVA0 655 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 TESQ9UGI8 421 aaKnown RBP13.07□□□□□ -0.32
CPSF1-212ENST00000616140 CBLCQ9ULV8 474 aa13.07□□□□□ -0.32
CPSF1-212ENST00000616140 ZNF337Q9Y3M9 751 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms