RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PSG6Q00889 435 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 FOXK2Q01167 660 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 DMWDQ09019 674 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 DSG2Q14126 1118 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 NSDHLQ15738 373 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF628Q5EBL2 1059 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 NXNL2Q5VZ03 156 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 HLA-DQA1Q5Y7H0 255 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 SDR16C5Q8N3Y7 309 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 NATD1Q8N6N6 113 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 C9orf43Q8TAL5 461 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 ZPLD1Q8TCW7 415 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 OSTF1Q92882 214 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 POP5Q969H6 163 aaKnown RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 SENP5Q96HI0 755 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 CNDP2Q96KP4 475 aaKnown RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 HS6ST2Q96MM7 605 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 CTRCQ99895 268 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 PDCD1LG2Q9BQ51 273 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 ALG8Q9BVK2 526 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 SLC25A18Q9H1K4 315 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 C8orf33Q9H7E9 229 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 SLC25A19Q9HC21 320 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 BCL2L10Q9HD36 194 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 MYEF2Q9P2K5 600 aaKnown RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 GNG8Q9UK08 70 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 IKZF2Q9UKS7 526 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 MKL2Q9ULH7 1088 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 STUB1Q9UNE7 303 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 GSTK1Q9Y2Q3 226 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 WBP11Q9Y2W2 641 aaKnown RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 PEX16Q9Y5Y5 336 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 PHF3Q92576 2039 aaKnown RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 KLHL33A6NCF5 533 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 A6NCN8 305 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 SNTNA6NMZ2 147 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 RIIAD1A6NNX1 92 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 SHISA8B8ZZ34 492 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 MASP2O00187 686 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 PLOD3O60568 738 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 CPNE3O75131 537 aaKnown RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 CCNKO75909 580 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 SCG5P05408 212 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 DBIP07108 87 aaKnown RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 GSTM3P21266 225 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 BLKP51451 505 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 CD83Q01151 205 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 COX10Q12887 443 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 DUSP8Q13202 625 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 OXA1LQ15070 435 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 PRICKLE4Q2TBC4 344 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 FBXO43Q4G163 708 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 COL13A1Q5TAT6 717 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 ARHGAP40Q5TG30 622 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 PAMR1Q6UXH9 720 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF620Q6ZNG0 422 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 LANCL3Q6ZV70 420 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 MBOAT2Q6ZWT7 520 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 MED25Q71SY5 747 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 CEACAM19Q7Z692 300 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 GPR135Q8IZ08 494 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 SLC7A5P1Q8MH63 180 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 KLHL36Q8N4N3 616 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 PROKR2Q8NFJ6 384 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 SFXN5Q8TD22 340 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 C4orf36Q96KX1 117 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 Q96M85 177 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 SIGLEC11Q96RL6 698 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 GDF15Q99988 308 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 NXF5Q9H1B4 397 aaKnown RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 OR10A5Q9H207 317 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 SMOC1Q9H4F8 434 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 Q9N2J8 555 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 POT1Q9NUX5 634 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 ZSCAN32Q9NX65 697 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 SEC14L4Q9UDX3 406 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 CFL2Q9Y281 166 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 MRPS33Q9Y291 106 aaKnown RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 AK6Q9Y3D8 172 aaKnown RBP5.16□□□□□ -1.58
LIMA1-215ENST00000552823 WDFY3Q8IZQ1 3526 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 KIF26BQ2KJY2 2108 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 FREM3P0C091 2139 aa5.16□□□□□ -1.58
LIMA1-215ENST00000552823 IGHV1OR15-9A0A0B4J2B8 117 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 FOXS1O43638 330 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 SELENOFO60613 162 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 CFIP05156 583 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 NGFRP08138 427 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 PTHLHP12272 177 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 ACVR2AP27037 513 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 CD1CP29017 333 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 DEFA1P59665 94 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 DEFA3P59666 94 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 SNRPGP62308 76 aaKnown RBP5.15□□□□□ -1.58
LIMA1-215ENST00000552823 MRPS15P82914 257 aaKnown RBP5.15□□□□□ -1.58
LIMA1-215ENST00000552823 CDK5Q00535 292 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 ARHGAP11BQ3KRB8 267 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 NIPAL1Q6NVV3 410 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 NPSR1Q6W5P4 371 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 RASSF6Q6ZTQ3 369 aa5.15□□□□□ -1.58
LIMA1-215ENST00000552823 SSX6Q7RTT6 188 aa5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms