RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 RBM24Q9BX46 236 aaKnown RBP13.49□□□□□ -0.25
UBE3B-212ENST00000540230 TMEM120AQ9BXJ8 343 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 OPN3Q9H1Y3 402 aaPredicted RBP13.49□□□□□ -0.25
UBE3B-212ENST00000540230 CRIM1Q9NZV1 1036 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 STOML1Q9UBI4 398 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 PACSIN3Q9UKS6 424 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 POLQO75417 2590 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 A8MXE2 369 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 SMNDC1O75940 238 aaKnown RBP eCLIP13.49□□□□□ -0.25
UBE3B-212ENST00000540230 CGAP01215 116 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 CRHP06850 196 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 PGCP20142 388 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 KLK2P20151 261 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 MAGEA8P43361 318 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 SELENBP1Q13228 472 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 ZNF239Q16600 458 aaKnown RBP13.49□□□□□ -0.25
UBE3B-212ENST00000540230 PLEKHM3Q6ZWE6 761 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 ZZZ3Q8IYH5 903 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 ROBO4Q8WZ75 1007 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 ST8SIA1Q92185 356 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 LURAP1Q96LR2 239 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 PRRG4Q9BZD6 226 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 MTHFD2LQ9H903 347 aaPredicted RBP13.49□□□□□ -0.25
UBE3B-212ENST00000540230 EXOSC3Q9NQT5 275 aaKnown RBP13.49□□□□□ -0.25
UBE3B-212ENST00000540230 ACER3Q9NUN7 267 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 RLIMQ9NVW2 624 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 KCNN3Q9UGI6 736 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 CHST2Q9Y4C5 530 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 A0A1W2PP18 115 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 BMP2P12643 396 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 IL7RP16871 459 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 CPOXP36551 454 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 KIR2DL3P43628 341 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 CPA2P48052 419 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 CRISP3P54108 245 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 CARD18P57730 90 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 MERTKQ12866 999 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 ZNF474Q6S9Z5 364 aaPredicted RBP13.48□□□□□ -0.25
UBE3B-212ENST00000540230 DLEU7Q6UYE1 221 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 ZNF836Q6ZNA1 936 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 RETREG3Q86VR2 466 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 ARFGAP2Q8N6H7 521 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 LINC01560Q8TB33 94 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 DNAJA3Q96EY1 480 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 ZNF559Q9BR84 538 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 SIKE1Q9BRV8 207 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 CCDC106Q9BWC9 280 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 RSPO3Q9BXY4 272 aaPredicted RBP13.48□□□□□ -0.25
UBE3B-212ENST00000540230 PIGMQ9H3S5 423 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 MCCC2Q9HCC0 563 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 CTPS2Q9NRF8 586 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 TMEM45AQ9NWC5 275 aa13.48□□□□□ -0.25
UBE3B-212ENST00000540230 FOXD3Q9UJU5 478 aaPredicted RBP13.48□□□□□ -0.25
UBE3B-212ENST00000540230 MCTS1Q9ULC4 181 aaKnown RBP13.48□□□□□ -0.25
UBE3B-212ENST00000540230 IGHV3-15A0A0B4J1V0 119 aa13.47□□□□□ -0.25
UBE3B-212ENST00000540230 MSTNO14793 375 aa13.47□□□□□ -0.25
UBE3B-212ENST00000540230 SYNGR4O95473 234 aa13.47□□□□□ -0.25
UBE3B-212ENST00000540230 DBIP07108 87 aaKnown RBP13.47□□□□□ -0.25
UBE3B-212ENST00000540230 FCGR2AP12318 317 aa13.47□□□□□ -0.25
UBE3B-212ENST00000540230 IDH2P48735 452 aaKnown RBP13.47□□□□□ -0.25
UBE3B-212ENST00000540230 IRX1P78414 480 aaPredicted RBP13.47□□□□□ -0.25
UBE3B-212ENST00000540230 FADDQ13158 208 aa13.47□□□□□ -0.25
UBE3B-212ENST00000540230 C3orf33Q6P1S2 294 aa13.47□□□□□ -0.25
UBE3B-212ENST00000540230 FAM214BQ7L5A3 538 aa13.47□□□□□ -0.25
UBE3B-212ENST00000540230 CMIPQ8IY22 773 aa13.47□□□□□ -0.25
UBE3B-212ENST00000540230 PEX5LQ8IYB4 626 aa13.47□□□□□ -0.25
UBE3B-212ENST00000540230 OR52P1PQ8NH57 321 aa13.47□□□□□ -0.25
UBE3B-212ENST00000540230 ZNF563Q8TA94 476 aa13.47□□□□□ -0.25
UBE3B-212ENST00000540230 ABHD3Q8WU67 409 aa13.47□□□□□ -0.25
UBE3B-212ENST00000540230 A4GALTQ9NPC4 353 aa13.47□□□□□ -0.25
UBE3B-212ENST00000540230 PAQR5Q9NXK6 330 aaPredicted RBP13.47□□□□□ -0.25
UBE3B-212ENST00000540230 TRIM33Q9UPN9 1127 aa13.47□□□□□ -0.25
UBE3B-212ENST00000540230 ZNF443Q9Y2A4 671 aaPredicted RBP13.47□□□□□ -0.25
UBE3B-212ENST00000540230 HRNRQ86YZ3 2850 aaPredicted RBP13.47□□□□□ -0.25
UBE3B-212ENST00000540230 CDHR4A6H8M9 788 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 SS18L1O75177 396 aaPredicted RBP13.46□□□□□ -0.25
UBE3B-212ENST00000540230 VIMP08670 466 aaKnown RBP13.46□□□□□ -0.25
UBE3B-212ENST00000540230 GKN3PP0CG01 181 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 ENPP1P22413 925 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 EEF1A1P68104 462 aaKnown RBP13.46□□□□□ -0.25
UBE3B-212ENST00000540230 FAM27E3Q08E93 113 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 HSP90B2PQ58FF3 399 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 PDSS1Q5T2R2 415 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 CLIP4Q8N3C7 705 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 ZNF610Q8N9Z0 462 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 RNF128Q8TEB7 428 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 TMEM234Q8WY98 164 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 CPNE4Q96A23 557 aaPredicted RBP13.46□□□□□ -0.25
UBE3B-212ENST00000540230 LRRC46Q96FV0 321 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 GMPPAQ96IJ6 420 aaPredicted RBP13.46□□□□□ -0.25
UBE3B-212ENST00000540230 OR5B2Q96R09 309 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 CPPED1Q9BRF8 314 aaPredicted RBP13.46□□□□□ -0.25
UBE3B-212ENST00000540230 RABEP2Q9H5N1 569 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 CCDC134Q9H6E4 229 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 MED4Q9NPJ6 270 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 CALML5Q9NZT1 146 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 GMEB1Q9Y692 573 aa13.46□□□□□ -0.25
UBE3B-212ENST00000540230 GJE1A6NN92 205 aa13.45□□□□□ -0.26
UBE3B-212ENST00000540230 TROVE2P10155 538 aaKnown RBP eCLIP13.45□□□□□ -0.26
UBE3B-212ENST00000540230 ARAFP10398 606 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms