RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 IFT20Q8IY31 132 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 SGMS2Q8NHU3 365 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 ZFP28Q8NHY6 868 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 ZFAND2BQ8WV99 257 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 APH1AQ96BI3 265 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 ARL8AQ96BM9 186 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 ZNF524Q96C55 264 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 ZMYND19Q96E35 227 aaPredicted RBP10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 C16orf58Q96GQ5 468 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 EGLN2Q96KS0 407 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 MS4A4EQ96PG1 132 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 SORCS2Q96PQ0 1159 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 TMEM237Q96Q45 408 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 OR5B2Q96R09 309 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 KCNA7Q96RP8 456 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 SOX7Q9BT81 388 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 BTBD2Q9BX70 525 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 BHLHE41Q9C0J9 482 aaPredicted RBP10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 HOXD1Q9GZZ0 328 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 ASB6Q9NWX5 421 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 TAS2R16Q9NYV7 291 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 EMC3Q9P0I2 261 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 RAB21Q9UL25 225 aa10.19□□□□□ -0.78
CLSTN3-209ENST00000539982 MGAM2Q2M2H8 2515 aa10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 ARFGEF3Q5TH69 2177 aa10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 IGKV3D-15A0A087WSY6 115 aa10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 A0A0A6YYJ9 748 aa10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 SLCO1B7G3V0H7 640 aa10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 VSNL1P62760 191 aa10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 POU6F2P78424 691 aaPredicted RBP10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 IMPG1Q17R60 797 aa10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 EXOSC6Q5RKV6 272 aaKnown RBP10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 SZRD1Q7Z422 152 aa10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 TRIM46Q7Z4K8 759 aa10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 WDR31Q8NA23 367 aa10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 ZNF527Q8NB42 609 aa10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 CIDECQ96AQ7 238 aaPredicted RBP10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 FBXO17Q96EF6 278 aa10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 ZNF764Q96H86 408 aaPredicted RBP10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 FUT8Q9BYC5 575 aa10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 METRNQ9UJH8 293 aa10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 NOSIPQ9Y314 301 aaKnown RBP10.18□□□□□ -0.78
CLSTN3-209ENST00000539982 TRIM49D1C9J1S8 452 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 ETV2O00321 342 aaPredicted RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 EIF4E2O60573 245 aaKnown RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 TBX19O60806 448 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 RSL1D1O76021 490 aaKnown RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 H6PDO95479 791 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 ATP6V1C1P21283 382 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 ATP5F1P24539 256 aaPredicted RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 NTF4P34130 210 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 FRKP42685 505 aaPredicted RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 COMPP49747 757 aaPredicted RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 DIO1P49895 249 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 RNF144AP50876 292 aaPredicted RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 PRKAA2P54646 552 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 FOXA1P55317 472 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 SNRPD2P62316 118 aaKnown RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 CSNK2A1P68400 391 aaPredicted RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 KIAA0040Q15053 153 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 QPRTQ15274 297 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 C1QTNF12Q5T7M4 302 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 ANKRD26P1Q6NSI1 321 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 C3orf33Q6P1S2 294 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 TMPPEQ6ZT21 453 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 MTDHQ86UE4 582 aaKnown RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 EIF1ADQ8N9N8 165 aaKnown RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 TOR1AIP2Q8NFQ8 470 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 OR5W2Q8NH69 310 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 JADE3Q92613 823 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 HPS1Q92902 700 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 L3HYPDHQ96EM0 354 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 OTUB1Q96FW1 271 aaPredicted RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 METTL2AQ96IZ6 378 aaKnown RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 STACQ99469 402 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 PAFAH2Q99487 392 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 VRK1Q99986 396 aaPredicted RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 BPESC1Q9GZL8 116 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 PIGUQ9H490 435 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 MID1IP1Q9NPA3 183 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 DUSP22Q9NRW4 184 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 ACSS1Q9NUB1 689 aaPredicted RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 ARGLU1Q9NWB6 273 aaPredicted RBP10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 GIN1Q9NXP7 522 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 NINJ2Q9NZG7 142 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 TMEM216Q9P0N5 145 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 MALT1Q9UDY8 824 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 TRAF6Q9Y4K3 522 aa10.17□□□□□ -0.78
CLSTN3-209ENST00000539982 NPIPA5A0A0B4J1W7 369 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 LRP5LA4QPB2 252 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 ZNF716A6NP11 495 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 NPIPA7E9PJI5 369 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 NPIPB8E9PQR5 432 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 ATP6V1G2-DDX39BF2Z307 99 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 SULT2B1O00204 365 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 GPR171O14626 319 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 ZNF264O43296 627 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 MRPL33O75394 65 aaKnown RBP10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 SEC22BO75396 215 aa10.16□□□□□ -0.78
CLSTN3-209ENST00000539982 ERLIN1O75477 346 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms