RNA–Protein interactions for RNA: ENST00000527469.1

CAPN1-209, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 584 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-209ENST00000527469 MRPL2Q5T653 305 aaKnown RBP12.03□□□□□ -0.48
CAPN1-209ENST00000527469 C3orf33Q6P1S2 294 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 GDF7Q7Z4P5 450 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 KRT73Q86Y46 540 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 RELL2Q8NC24 303 aaPredicted RBP12.03□□□□□ -0.48
CAPN1-209ENST00000527469 BBS10Q8TAM1 723 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 TSPEARQ8WU66 669 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 CNOT9Q92600 299 aaKnown RBP12.03□□□□□ -0.48
CAPN1-209ENST00000527469 OSTF1Q92882 214 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 MAL2Q969L2 176 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 DOCK7Q96N67 2140 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 NPAS1Q99742 590 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 KLHDC3Q9BQ90 382 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 PIGMQ9H3S5 423 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 ZNF385DQ9H6B1 395 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 NPDC1Q9NQX5 325 aaPredicted RBP12.03□□□□□ -0.48
CAPN1-209ENST00000527469 ACER3Q9NUN7 267 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 SLC25A37Q9NYZ2 338 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 VAPAQ9P0L0 249 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 FOXD3Q9UJU5 478 aaPredicted RBP12.03□□□□□ -0.48
CAPN1-209ENST00000527469 PACSIN3Q9UKS6 424 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 IFT52Q9Y366 437 aa12.03□□□□□ -0.48
CAPN1-209ENST00000527469 A0A1W2PNV4 684 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 CFAP73A6NFT4 308 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 ADAMDEC1O15204 470 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 NUDT7P0C024 238 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 SLC6A2P23975 617 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 CPOXP36551 454 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 APOBEC1P41238 236 aaKnown RBP12.02□□□□□ -0.49
CAPN1-209ENST00000527469 HTR3AP46098 478 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 IDH2P48735 452 aaKnown RBP12.02□□□□□ -0.49
CAPN1-209ENST00000527469 TFF3Q07654 80 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 CYLC2Q14093 348 aaPredicted RBP12.02□□□□□ -0.49
CAPN1-209ENST00000527469 ZNF311Q5JNZ3 666 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 PRAMEF8Q5VWM4 474 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 PRAMEF7Q5VXH5 474 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 AP1ARQ63HQ0 302 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 GTF2IRD2BQ6EKJ0 949 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 ZNF836Q6ZNA1 936 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 LUZP2Q86TE4 346 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 GTF2IRD2Q86UP8 949 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 KIF18BQ86Y91 864 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 MSRB3Q8IXL7 192 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 DPP10Q8N608 796 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 FAM71CQ8NEG0 241 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 NFKBIDQ8NI38 313 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 RNASE6Q93091 150 aaKnown RBP12.02□□□□□ -0.49
CAPN1-209ENST00000527469 OR5B2Q96R09 309 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 SPATA5L1Q9BVQ7 753 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 NSRP1Q9H0G5 558 aaKnown RBP12.02□□□□□ -0.49
CAPN1-209ENST00000527469 ENKD1Q9H0I2 346 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 SLC52A3Q9NQ40 469 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 DNAJB12Q9NXW2 375 aaKnown RBP12.02□□□□□ -0.49
CAPN1-209ENST00000527469 SLC13A4Q9UKG4 626 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 ZNF443Q9Y2A4 671 aaPredicted RBP12.02□□□□□ -0.49
CAPN1-209ENST00000527469 EMC9Q9Y3B6 208 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 CAPN7Q9Y6W3 813 aa12.02□□□□□ -0.49
CAPN1-209ENST00000527469 A0A0J9YW62 118 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 SYT5O00445 386 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 THBS1P07996 1170 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 BMP2P12643 396 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 RPS4Y1P22090 263 aaKnown RBP12.01□□□□□ -0.49
CAPN1-209ENST00000527469 SSTR2P30874 369 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 CDK6Q00534 326 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 SLC25A53Q5H9E4 307 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 CGB2Q6NT52 195 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 REEP3Q6NUK4 255 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 PLEKHM3Q6ZWE6 761 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 ZNF550Q7Z398 422 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 GRINAQ7Z429 371 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 VRK2Q86Y07 508 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 SLC25A43Q8WUT9 341 aaPredicted RBP12.01□□□□□ -0.49
CAPN1-209ENST00000527469 CPNE4Q96A23 557 aaPredicted RBP12.01□□□□□ -0.49
CAPN1-209ENST00000527469 ZNF607Q96SK3 696 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 CGREF1Q99674 301 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 RBM24Q9BX46 236 aaKnown RBP12.01□□□□□ -0.49
CAPN1-209ENST00000527469 FAM107BQ9H098 131 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 RNF122Q9H9V4 155 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 ANGPT4Q9Y264 503 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 DSPPQ9NZW4 1301 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 KIAA1549Q9HCM3 1950 aa12.01□□□□□ -0.49
CAPN1-209ENST00000527469 NBPF19A0A087WUL8 3843 aa12□□□□□ -0.49
CAPN1-209ENST00000527469 CDHR4A6H8M9 788 aa12□□□□□ -0.49
CAPN1-209ENST00000527469 ETV2O00321 342 aaPredicted RBP12□□□□□ -0.49
CAPN1-209ENST00000527469 DNAJA2O60884 412 aa12□□□□□ -0.49
CAPN1-209ENST00000527469 BCAS1O75363 584 aaPredicted RBP12□□□□□ -0.49
CAPN1-209ENST00000527469 PGM3O95394 542 aa12□□□□□ -0.49
CAPN1-209ENST00000527469 NTN1O95631 604 aa12□□□□□ -0.49
CAPN1-209ENST00000527469 ARAFP10398 606 aa12□□□□□ -0.49
CAPN1-209ENST00000527469 CD1EP15812 388 aa12□□□□□ -0.49
CAPN1-209ENST00000527469 HOXB9P17482 250 aaPredicted RBP12□□□□□ -0.49
CAPN1-209ENST00000527469 CCNA2P20248 432 aa12□□□□□ -0.49
CAPN1-209ENST00000527469 FKBP2P26885 142 aaKnown RBP12□□□□□ -0.49
CAPN1-209ENST00000527469 SHC1P29353 583 aa12□□□□□ -0.49
CAPN1-209ENST00000527469 KIR2DL3P43628 341 aa12□□□□□ -0.49
CAPN1-209ENST00000527469 KCNJ5P48544 419 aa12□□□□□ -0.49
CAPN1-209ENST00000527469 POLR2HP52434 150 aaKnown RBP12□□□□□ -0.49
CAPN1-209ENST00000527469 MTPNP58546 118 aa12□□□□□ -0.49
CAPN1-209ENST00000527469 CSNK2A1P68400 391 aaPredicted RBP12□□□□□ -0.49
CAPN1-209ENST00000527469 KLF10Q13118 480 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms